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immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
https://presto.readthedocs.io
GNU Affero General Public License v3.0
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Update example workflows for presto v0.5.7 #61

Closed ssnn-airr closed 6 years ago

ssnn-airr commented 6 years ago

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

There are lots of little pipeline simplification updates in presto v0.5.7, such as primer/barcode field renaming and collapse action in PairSeq.

Need to simplify the relevant workflows with this changes.

ssnn-airr commented 6 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Tested and finished in 5efe020.

ssnn-airr commented 6 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Partially done in 27f61fa.

Still need to change and test: