Tools should not write empty fail files

immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.

https://presto.readthedocs.io

GNU Affero General Public License v3.0

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Tools should not write empty fail files #62

Closed ssnn-airr closed 6 years ago

ssnn-airr commented 6 years ago

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Remove opening of empty fail files. See changeo issues:

https://bitbucket.org/kleinstein/changeo/issues/103/tools-should-not-create-empty-fail-file
https://bitbucket.org/kleinstein/changeo/issues/119/convert-output-handle-checks-to-try-blocks

ssnn-airr commented 6 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Done in d069248.