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immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
https://presto.readthedocs.io
GNU Affero General Public License v3.0
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Add simple preprocessing workflow #66

Open ssnn-airr opened 5 years ago

ssnn-airr commented 5 years ago

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

It might be worth it to add a simplified preprocessing workflow to the docs. Eg:

  1. AssemblePairs
  2. FilterSeq
  3. CollapseSeq
ssnn-airr commented 5 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

We can use the clontech pipeline for this. Need to find suitable public data.