Closed ssnn-airr closed 4 years ago
Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).
Thanks for reporting this. We’ll take a look. This looks easy to fix.
Until we post a fix, I suspect you can get these files to run through by first running them through FilterSeq.py missing to remove everything with a lot (all) Ns.
Original report by Carolina Monzó (Bitbucket: [Carolina Monzó](https://bitbucket.org/Carolina Monzó), ).
Hi,
I’m using FilterSeq on some very bad quality .fastq files, and when reads are fully failed (all N), it stops working since the quality of the whole read is 0.
Example read:
Error: