Closed ssnn-airr closed 3 years ago
Original comment by Christopher Parks (Bitbucket: [Christopher Parks](https://bitbucket.org/Christopher Parks), ).
Added version number.
Original comment by Christopher Parks (Bitbucket: [Christopher Parks](https://bitbucket.org/Christopher Parks), ).
attached the V gene reference file.
Original report by Christopher Parks (Bitbucket: [Christopher Parks](https://bitbucket.org/Christopher Parks), ).
When ordered file lists are added as inputs to AssemblePairs.py sequential under the ‘-1’ and ‘-2’ arguments, only the first file pair assembles successfully. Failure happens after initializing the second file pair. The failure is a result of the V gene reference file, specified by the ‘-r’ argument, not being parsed for the file pairs after the first. I worked around the issue by calling the AssemblePairs.py sequential function multiple times for individual file pairs. The downsampled FASTQ files used in the below example are attached.