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immcore / iS-CellR

iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data
GNU General Public License v3.0
23 stars 6 forks source link

Installation error #2

Open martaint opened 5 years ago

martaint commented 5 years ago

Hi,

I run into an installation error, using the command shiny::runGitHub("iS-CellR", "immcore")

I get: 

Error in initialize_python(required_module, use_environment) : 
  Python shared library '/usr/lib/libpython2.7.so' not found, Python bindings not loaded.

Any idea how to solve it? Thanks a lot!

Marta

martaint commented 5 years ago

I could solve the error running 

apt-get update
apt-get install -y libpython-dev

but now I got this new error

Error in py_module_import(module, convert = convert) : ImportError: No module named umap

I have installed umap-learn following the instructions form the umap github page, so I don't really understand what can be the problem.

Thanks!

Marta

immcore commented 5 years ago

Hi Marta,

All the dependencies of the tool should be installed automatically when run first time. Could you please check that R package "reticulate" is installed and in the PATH?

I assume you have downloaded latest version.

Many thanks, Mitul