imminfo / tcr

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
https://immunarch.com/
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R CMD check issues #62

Closed hadley closed 8 years ago

hadley commented 8 years ago
checking whether package ‘tcR’ can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import by ‘grid::arrow’ when loading ‘tcR’
  Warning: replacing previous import by ‘grid::unit’ when loading ‘tcR’
See ‘/private/tmp/Rtmp7xChS1/check_cran15edd13c5afb7/tcR.Rcheck/00install.out’ for details.
checking installed package size ... NOTE
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data   1.2Mb
    doc    3.9Mb
checking re-building of vignette outputs ... NOTE
Error in re-building vignettes:
  ...

    union

Warning: replacing previous import by 'grid::arrow' when loading 'tcR'
Warning: replacing previous import by 'grid::unit' when loading 'tcR'

Attaching package: 'tcR'

The following object is masked from 'package:igraph':

    diversity

Using People as id variables
Using Gene as id variables
Using Gene as id variables
Using Gene as id variables
Warning: Removed 4 rows containing missing values (geom_text).
Warning: Removed 20 rows containing missing values (geom_point).
Warning: Removed 20 rows containing missing values (geom_point).
Warning: Removed 20 rows containing missing values (geom_point).
Warning: Removed 20 rows containing missing values (geom_point).
Quitting from lines 501-503 (tcrvignette.Rmd) 
Error: processing vignette 'tcrvignette.Rmd' failed with diagnostics:
Unknown parameters: binwidth, bins, origin, right
Execution halted

Please fix ASAP. I am submitting to CRAN tomorrow.

vadimnazarov commented 8 years ago

Hi Hadley,

Thanks, I've already fixed this in the development version and right now I'm in the process of submitting the ggplot2-hotfix to CRAN.

vadimnazarov commented 8 years ago

All ok now.