VJ combination geneUsage result missed the last V and J segments

imminfo / tcr

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

https://immunarch.com/

37 stars 22 forks source link

VJ combination geneUsage result missed the last V and J segments #73

Closed vixenk closed 8 years ago

vixenk commented 8 years ago

When using geneUsage with .genes = list(HUMAN_TRBV_MITCR, HUMAN_TRBJ) either on a single df or on list with df's geneUsage(datalist[[1]], .genes = list(HUMAN_TRBV_MITCR, HUMAN_TRBJ), .quant = NA, .norm = T, .ambig = F) , it results in a 47x12 tables, missing TRBV9 row and TRBJ2-7 column.

I use the very last version of Master branch.

vadimnazarov commented 8 years ago

Fixed, please check it

vixenk commented 8 years ago

Yep, seems to work correct.

vadimnazarov commented 8 years ago

nice!