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imminfo / tcr

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
https://immunarch.com/
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New input formats #8

Closed vadimnazarov closed 5 years ago

vadimnazarov commented 9 years ago

Please specify here which software for processing NGS data and extracting CDR3 sequences do you use so I can update tcR with function for reading the output of this software.

this-is-how-we-see commented 7 years ago

sampleExport.2017-01-16_10-03-10.zip

I have been parsing Adaptive immunoSEQ files and am really enjoying the additional functionality available in tcR.

I have found that files that I had sequenced more recently will not parse as .format = "immunoseq3". Can you look at the file and determine if immunoseq4 needs to be arranged for the updated .col headings? I am not a programmer or I would offer to assist.

Thank you for creating this amazing package!