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immunoengineer / gliph

Grouping of Lymphocyte Interactions by Paratope Hotspots
GNU General Public License v3.0
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output option does nothing #5

Open malisas opened 6 years ago

malisas commented 6 years ago

Hi, specifying the output option for gliph-group-discovery.pl logging does not seem to do anything. (This is not urgent but it confused me a little)

Note to community: This is different from the Gliph results location, which is hardcoded to be in the same folder as the location of the input TCR table, e.g.:

malisa:data$ ls
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv-clone-network.txt
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv-convergence-groups.txt
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv-kmer_resample_1000_log.txt
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv-kmer_resample_1000_minp0.001_ove10.txt

The last four files are Gliph output.

SGKhir commented 6 years ago

I am bit lost at using this..anyway of contacting you other than GitHub?