Hi, specifying the output option for gliph-group-discovery.pl logging does not seem to do anything. (This is not urgent but it confused me a little)
Note to community: This is different from the Gliph results location, which is hardcoded to be in the same folder as the location of the input TCR table, e.g.:
malisa:data$ ls
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv-clone-network.txt
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv-convergence-groups.txt
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv-kmer_resample_1000_log.txt
20180215_MegaPool_Paired_TCRs_for_Gliph.tsv-kmer_resample_1000_minp0.001_ove10.txt
Hi, specifying the
output
option forgliph-group-discovery.pl
logging does not seem to do anything. (This is not urgent but it confused me a little)Note to community: This is different from the Gliph results location, which is hardcoded to be in the same folder as the location of the input TCR table, e.g.:
The last four files are Gliph output.