No details about the process of making HLA dictionary files

immunogenomics / HLA-TAPAS

HLA-TAPAS pipeline for HLA association and fine-mapping studies

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No details about the process of making HLA dictionary files #16

Closed LDS-axel closed 1 year ago

LDS-axel commented 2 years ago

When I tried to make a hla reference panel, I followed your pipeline, but something really confusing me is the format of HLA dictionary and the process to make hla dictionary, which didn't raised in the pipeline.

yluo86 commented 2 years ago

The MakeReference module is a remake of the original SNP2HLA package. The python code for doing this can be found here https://github.com/immunogenomics/HLA-TAPAS/blob/master/MakeReference/src/encodeHLA.py.