immunogenomics / SCENT

Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
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how to create custome bed file for gene-peak pair list #14

Open GGboy-Zzz opened 1 week ago

GGboy-Zzz commented 1 week ago

Tkans your for the interesting tool. I countered some blocker in using it. As issue 6 mentioned, I want to create a gene-peak pair list for specific species, so I firstly need to create a custome bed file. Is this step about extracting the genomic coordinates of each gene and then extending 500 kb upstream and downstream, respectively? best regards!