Open dataset of SCENT peaks?

immunogenomics / SCENT

Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA

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Open dataset of SCENT peaks? #5

Closed gabrielcerono closed 3 months ago

gabrielcerono commented 4 months ago

Hello everyone, great fan of this work! I have a question:

Is there any chance to get access to (already computed) a genome-wide scent peaks database? Does this dataset exist?

Bests,

Gabriel.

YichaoOU commented 3 months ago

Hi,

Same request here. In your paper, you said, "We constructed 23 enhancer–gene maps with a total of 87,648 peak–gene links (false discovery rate (FDR) <10%)".

Can you please upload these 87K links here?

Thanks, Yichao

saorisakaue commented 3 months ago

Hello Gabriel and Yichao,

Thank you for your interest in SCENT and so sorry for my delayed response! Now the linkages are available from the following dropbox link.

https://www.dropbox.com/scl/fo/g20tfnwkcuhib4a6z1wp4/ABYaK5s8bwTLnzrJ0KoZn48?rlkey=j1s5365gso53r2v2dsdynnsr2&st=5np1fq0a&dl=0

I hope this helps.