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immunogenomics / goshifter

GoShifter
http://www.broadinstitute.org/mpg/goshifter/
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dead link to precomputed LD files #5

Open josephvitti opened 5 years ago

josephvitti commented 5 years ago

Hi there, it looks as though the link given in the README for the pre-computed LD files doesn't work: https://www.broadinstitute.org/~slowikow/tgp/pairwise_ld/. Do these files still exist somewhere? Thank you!

josephvitti commented 5 years ago

Poking around on the Broad server, I was able to find files that link here: https://personal.broadinstitute.org/slowikow/GoShifterLd/

However, the link is 403 forbidden at the moment.

Arya-bioinformatics commented 5 years ago

we cannot find the precomputed pairwise LD files

SCZXH commented 5 years ago

Both the links above couldn't work. Could you please check it ?

Arya-bioinformatics commented 5 years ago

Yes, I am sure that both links fail to work.

At 2019-09-14 04:07:38, "SCZXH" notifications@github.com wrote:

Both the links above couldn't work. Could you please check it ?

— You are receiving this because you commented. Reply to this email directly, view it on GitHub, or mute the thread.

slowkow commented 5 years ago

@harmjanwestra I uploaded the files to figshare. Could I please ask you to update the links in this repo to point to these files?

https://figshare.com/articles/Data_for_GoShifter/9857327

We can download the data like this:

curl https://ndownloader.figshare.com/articles/9857327/versions/1 > data.zip
unzip data.zip

Or we can also navigate the figshare website and download a single file.

Arya-bioinformatics commented 5 years ago

Thanks for your reply. It's my pleasure to update the links that point to these files,but please tell me where should I update these files links? On the github or anywhere else?

At 2019-09-17 22:12:47, "Kamil Slowikowski" notifications@github.com wrote:

@harmjanwestra I uploaded the files to figshare. Could I please ask you to update the links in this repo to point to these files?

https://figshare.com/articles/Data_for_GoShifter/9857327

We can download the data like this:

curl https://ndownloader.figshare.com/articles/9857327/versions/1 > data.zip unzip data.zip

Or we can also navigate the figshare website and download a single file.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub, or mute the thread.