Open davetang opened 5 months ago
Hi @davetang,
Thanks for reporting this. I can reproduce the bug in my environment, also R 4.3.3. It is because R deprecated the old serialization scheme. The files are not corrupt. There is a workaround.
What I did is the following:
install.packages("readr")
library(Seurat)
readr::read_rds("Downloads/pbmc.RData")
I will look into updating the files but I think Zenodo may make it hard to replace existing files.
Hi @pati-ni,
thank you for the reply and workaround! Regarding Zenodo, I guess you could create a new version?
For the workaround, I get the following error:
library(Seurat)
readr::read_rds("~/work/pbmc.RData")
Error: Please run UpdateSeuratObject on your object
Error during wrapup: no slot of name "images" for this object of class "Seurat"
Error: no more error handlers available (recursive errors?); invoking 'abort' restart
I'm using
packageVersion("Seurat")
[1] ‘5.0.3’
and
packageVersion("SeuratObject")
[1] ‘5.0.1’
Hi there,
I was trying to follow the tutorials and wanted to look at the data shared on Zenodo but I get an error when I try to load the file. Here's a reproducible example:
Download the data.
Try to load
pbmc.RData
.pbmc_stim.RData
loads fine.