Closed Guliariel closed 6 days ago
There are two different arguments, reduction.use and reduction.save and this is the reason you are getting this error. You need to reduction.use='lsi'
On Thu, Aug 15, 2024, 20:02 Guliariel @.***> wrote:
Hello I am trying to runHArmony for a merged Seurat object (scATAC-like data). I am using this command: MYSEURATOBJ <- RunHarmony(object = MYSEURATOBJ, group.by.vars = 'dataset', reduction = 'lsi', assay.use = 'bins', project.dim = FALSE).
I receive this error: argument 3 matches multiple formal arguments
I would appreciate your suggestion how to solve this issue. Thank you
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Hello I am trying to runHArmony for a merged Seurat object (scATAC-like data). I am using this command: MYSEURATOBJ <- RunHarmony(object = MYSEURATOBJ, group.by.vars = 'dataset', reduction = 'lsi', assay.use = 'bins', project.dim = FALSE).
I receive this error: argument 3 matches multiple formal arguments
I would appreciate your suggestion how to solve this issue. Thank you