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immunogenomics / harmony

Fast, sensitive and accurate integration of single-cell data with Harmony
https://portals.broadinstitute.org/harmony/
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Cannot install Harmony from GitHub, callr issue #81

Closed silvainp closed 4 years ago

silvainp commented 4 years ago

Really excited to test Harmony based on the last biorXiv paper but I struggle to install it.

Error: Failed to install 'harmony' from GitHub:
  lazy-load database '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/callr/R/callr.rdb' is corrupt
In addition: Warning messages:
1: In get0(oNam, envir = ns) : restarting interrupted promise evaluation
2: In get0(oNam, envir = ns) : internal error -3 in R_decompress1

Not sure if it's an issue from my R framework or something from the installing. I delete and re-install callr but same problem. Thanks for your help.

slowkow commented 4 years ago

When seeking help with an error, always consider sharing your entire command, the entire output of the command, and also the entire output of sessionInfo().

slowkow commented 4 years ago

This issue is a duplicate of #87, #88, #90

Could I please ask that we continue this discussion in #90?