Thanks for your software!
I run the same data and same command for twice , but I got a different cell.embeddings after RunHarmony, lead to different cluster results, does it can not be reproduced?
followed my command:
SAA_filter_20k_pcad_mic200<- RunHarmony(SAA_filter_20k,"revised_sample_name", dims.use=1:50, max.iter.cluster=200, reductioin="pca")
RuiqinZheng
commented
4 years ago
Thanks for your software! I run the same data and same command for twice , but I got a different cell.embeddings after RunHarmony, lead to different cluster results, does it can not be reproduced? followed my command: SAA_filter_20k_pcad_mic200<- RunHarmony(SAA_filter_20k,"revised_sample_name", dims.use=1:50, max.iter.cluster=200, reductioin="pca")