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immunogenomics / presto

Fast Wilcoxon and auROC
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Presto as an R package ? #13

Open Pacomito opened 3 years ago

Pacomito commented 3 years ago

Hello,

Thank you for this package, I was wondering if the package is planned to be on CRAN for R-4.1 release ?

This is because I would love to integrate the fast wilcoxon fonctionality in a package I am developping, but as it is a Bioconductor package it cannot import package from GitHub.

I am actually using matrixTests::col_wilcoxon_twosample, but this is still quite slow and RAM heavy.

Cheers, Pacôme

mihem commented 3 years ago

@slowkow

I am also very much interested in this issue.

Thanks for this great package!

I think it would be of great value for a lot of people if presto was on CRAN/Bioconductor. Seurat developers said they would likely integrate presto with their function to determine DE genes, FindMarkers, if presto was on CRAN/Bioconductor https://github.com/satijalab/seurat-wrappers/issues/90 (Right now it's part of seurat-wrappers package thanks to jasonj708, but if it was part of Seurat, that would be even nicer of course.)

Thanks! Mischko

nick-youngblut commented 4 weeks ago

It appears that the CRAN prep was completed quite a while ago, but I don't see presto on CRAN (or Bioconductor). Is there still a plan on publishing this package on CRAN/Bioconductor?