install fails R 4.2.2

[niko-balanis]

I get this issue on the newest R

install.packages("presto")

Warning in install.packages : package ‘presto’ is not available for this version of R

A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

[niko-balanis]

It works with devtools install. maybe that should be the listed method on the github

[wish1832]

+1 on this one. I'm using R 4.2.2 and I get the same message, but devtools::install_github("immunogenomics/presto") worked.

[ajynair]

Even devtools install shows error for me.

devtools::install_github("immunogenomics/presto") Using github PAT from envvar GITHUB_PAT Error: Failed to install 'unknown package' from GitHub: HTTP error 401. Bad credentials

Rate limit remaining: 53/60 Rate limit reset at: 2023-04-30 21:15:46 UTC

[slowkow]

@ajynair I just ran devtools::install_github("immunogenomics/presto") successfully on R version 4.2.3 (2023-03-15).

Please consider sharing your sessionInfo().

[schwebels]

I am getting the same error when running devtools::install_github("immunogenomics/presto") R version 4.3.3 (2024-02-29 ucrt)

package ‘devtools’ successfully unpacked and MD5 sums checked

devtools::install_github("immunogenomics/presto") Using GitHub PAT from the git credential store. Error: Failed to install 'unknown package' from GitHub: HTTP error 401. Bad credentials

Rate limit remaining: 57/60 Rate limit reset at: 2024-04-29 21:01:47 UTC

SessionInfo() R version 4.3.3 (2024-02-29 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 11 x64 (build 22631)
Matrix products: default
locale: [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 LC_MONETARY=English_United States.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8
time zone: America/New_York tzcode source: internal attached base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached): [1] vctrs_0.6.5 cli_3.6.2 rlang_1.1.3 stringi_1.8.3 purrr_1.0.2 pkgload_1.3.4 promises_1.3.0 shiny_1.8.1.1 [9] xtable_1.8-4 glue_1.7.0 htmltools_0.5.8.1 httpuv_1.6.15 pkgbuild_1.4.4 ellipsis_0.3.2 fastmap_1.1.1 lifecycle_1.0.4 [17] memoise_2.0.1 BiocManager_1.30.22 stringr_1.5.1 compiler_4.3.3 miniUI_0.1.1.1 sessioninfo_1.2.2 fs_1.6.3 htmlwidgets_1.6.4 [25] Rcpp_1.0.12 urlchecker_1.0.1 rstudioapi_0.16.0 later_1.3.2 digest_0.6.35 R6_2.5.1 curl_5.2.1 usethis_2.2.3 [33] magrittr_2.0.3 tools_4.3.3 mime_0.12 devtools_2.4.5 profvis_0.3.8 remotes_2.5.0 cachem_1.0.8

Thanks for your help!

[slowkow]

@schwebels I just tried searching the web for this query:

Error: Failed to install 'unknown package' from GitHub: HTTP error 401. Bad credentials

and I found a few relevant links:

• https://stackoverflow.com/questions/70908295/failed-to-install-unknown-package-from-github
• https://forum.posit.co/t/unable-to-install-packages-from-github/124372

I'm copying the suggestion from the Posit forums here:

This arises from an obscure feature in devtools. Check to see if you have a personal access token (PAT) set with

Sys.getenv("GITHUB_PAT")

If you do, make a careful record of it, then remove from the environment with

Sys.unsetenv("GITHUB_PAT")

Good luck! Let us know if you still have issues after removing your PAT.

[schwebels]

thanks for your help!