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immunogenomics / symphony

Efficient and precise single-cell reference atlas mapping with Symphony
GNU General Public License v3.0
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Create reference using harmonypy results #32

Closed yyoshiaki closed 1 year ago

yyoshiaki commented 2 years ago

Hi, thank you for developing a great tool!

I have a reference panel made by using scanpy and harmonypy, and considering performing query mapping of seurat objects using symphony. Do you have any experience exporting anndata objects made by harmonypy to symphony reference in R? If so, could you please share the procedures?

Best, Yoshi

joycekang commented 1 year ago

Hi Yoshi, There is now a python version of symphony that should work with harmonypy, written by another group. You can check it out here: https://github.com/potulabe/symphonypy

yyoshiaki commented 1 year ago

Thank you very much! I'll try it.