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immunogenomics / symphony

Efficient and precise single-cell reference atlas mapping with Symphony
GNU General Public License v3.0
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Question about mapQuery function #51

Open MoLuLuMo opened 1 month ago

MoLuLuMo commented 1 month ago

query <- mapQuery( scale.data, meta.data, ref, vars = 'sample', do_normalize = FALSE, do_umap = TRUE)

Scaling and synchronizing query gene expression Found 2295 out of 3000 reference variable genes in query dataset Project query cells using reference gene loadings Clustering query cells to reference centroids Correcting query batch effects UMAP Error in uwot::umap_transform(t(Zq_corr), ref_umap_model) : Incorrect dimensions: X must have 30 columns