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immunogenomics / symphony

Efficient and precise single-cell reference atlas mapping with Symphony
GNU General Public License v3.0
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Symphony installation question #6

Closed rach88 closed 3 years ago

rach88 commented 3 years ago

Hi,

I am trying to install symphony but run into the following errors:

Configuration failed to find the harfbuzz freetype2 fribidi library Error installing packages textshaping, ragg and ggraster

Any help is appreciated!

joycekang commented 3 years ago

Hi,

Thanks for your message! I'm not quite sure what is causing the error. Symphony does not depend on textshaping or ragg, so I'm not sure why it's trying to install those, but it does depend on ggrastr (spelled without the e). The ggrastr functionality is mainly used for plotting. Can you try installing ggrastr separately and see if that helps? install.packages('ggrastr')

joycekang commented 3 years ago

Hi - as an update to this issue, please see under "Troubleshooting" on the README page. Let me know if you're able to resolve this!

slowkow commented 2 years ago

@joycekang You might consider dropping the ggrastr dependency and using scattermore instead. This might resolve some installation issues and also give better graphical output. (I was a ggrastr user until I tried scattermore.)