lucassalas
commented
1 year ago Hi Jayakanthan,
Have you requested the license through your institution? Please see the Readme on GitHub.
Once you have the library I will be happy to help if you have troubles with your code.
Best, Lucas Lucas A Salas, MD MPH PhD Assistant Professor Department of Epidemiology Dartmouth College Cancer Population Sciences Research Program Dartmouth Hitchcock- Norris Cotton Cancer Center 1 Medical Center Dr, DHMC WTRB 659 Lebanon, NH 03756 (o) 603-646-5496 dartmouth.eduhttps://geiselmed.dartmouth.edu/epidemiology/ | Salas Labhttps://sites.dartmouth.edu/salaslab/ | Twitterhttps://twitter.com/lsalas_epigenet | ORCIDhttps://orcid.org/0000-0002-2279-4097
On Mar 22, 2023, at 3:50 AM, Jayakanthankk @.***> wrote:
Dear Colleagues, I have tried many times on the BloodExtended EPIC data as following:
CellCountsEstimation <- estimateCellCounts2(RGSet, compositeCellType = "BloodExtended", processMethod = "preprocessNoob", probeSelect = "IDOL", cellTypes = c( "Bas", "Bmem", "Bnv", "CD4mem", "CD4nv", "CD8mem", "CD8nv", "Eos", "Mono", "Neu", "NK", "Treg"), referencePlatform=c("IlluminaHumanMethylationEPIC"))
Error in get(referencePkg) : object 'FlowSorted.BloodExtended.EPIC' not found
Since I am new to minfi, could anyone give me a hint about this issue? Thank you so much for your help in advance! Best, Jayakanthan
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Dear Colleagues, I have tried many times on the BloodExtended EPIC data as following:
CellCountsEstimation <- estimateCellCounts2(RGSet, compositeCellType = "BloodExtended", processMethod = "preprocessNoob", probeSelect = "IDOL", cellTypes = c( "Bas", "Bmem", "Bnv", "CD4mem", "CD4nv", "CD8mem", "CD8nv", "Eos", "Mono", "Neu", "NK", "Treg"), referencePlatform=c("IlluminaHumanMethylationEPIC"))
Error in get(referencePkg) : object 'FlowSorted.BloodExtended.EPIC' not found
Since I am new to minfi, could anyone give me a hint about this issue? Thank you so much for your help in advance! Best, Jayakanthan