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immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
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Problems with Repload for 10x data #112

Open annecar opened 4 years ago

annecar commented 4 years ago

Hi I am starting to use Immunarch for 10x sc paired data. Thanks for implementing it!

I have loaded a dataset where my samples are defined by the Column "Cluster". When i load the dataset, nevetherless, i am not able not split up the samples using your prposed code: scdata_cl <- select_clusters(scdata_pat, scdata$bc_cluster, "Cluster"), because i do not appear to have a slot called "bc_cluster" or "bc_patient", as for example your exmaple dataset scdata has. How can i add this info to my immunarch file?

This is not clear from your vignette.

Thanks a lot for your help. annecar

ghost commented 3 years ago

Hi, did you manage solving this problem?

Andle

Alexander230 commented 3 years ago

Hi, @annecar and @aleofifi! My name is Aleksandr Popov, I am a developer of the Immunarch package. Thank you for using our software!

Could you, please, provide an example of data to reproduce this bug? I will then work on an update for Immunarch to fix it.

Best regards, Aleksandr