search

immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
312 stars 65 forks source link

repOverlap on complete nucleotide sequence? #199

Open dl-mallory opened 2 years ago

dl-mallory commented 2 years ago

Hi, apologies if this is a rather simple issue, however, I was wondering if it would be possible to modify the overlap() function to calculate overlap based on the Sequence and not the CDR3.nt column?

Alexander230 commented 2 years ago

Hi, @dl-mallory! My name is Aleksandr Popov, I am a developer of the Immunarch package. Thank you for using our software!

Current implementation of repOverlap doesn't support calculating overlap based on the Sequence column. What task do you want to complete? Maybe, there exists another way to do it.

Best regards, Aleksandr