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immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
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About calculating Diversity #217

Open Qlinsane1 opened 2 years ago

Qlinsane1 commented 2 years ago

❓ Questions and Help

We have a set of listed tutorials available on the website. Hi, When I try to use your package to calculate diversity of T cells, the example data you provided are TCR data with corresponding clinical information. But as for me, I used 10X GEX data combined with TCR data. So I truly don't know how to process my data. Hope you can help me with it. Thank you！

I had once tried to add celltype into TCR data. But after I use repload(), the celltype vanished. But I need to calculate the diversity of each celltype in every sample.

Alexander230 commented 2 years ago

Hi, @Qlinsane1! My name is Aleksandr Popov, I am a developer of the Immunarch package. Thank you for using our software!

Could you, please, provide a small sample of your data? It will help me to check the repLoad function and find the bug; or if this format is not currently supported, the example will help to add support for it in the future.

Good luck, Aleksandr