Open beginner984 opened 2 years ago
To add to the question above: I am also working with scTCRseq and scBCRseq data. I am able to read in multiple sample files with a function, but I am not able to run any analysis as the expected "CD3.AA" etc column names are different by default in CellRanger processed files. The ability to merge a seurat object would be great, but I think I can find a workaround that, to be ultimately be able to do analysis of specific T cell subsets called by Seurat. Any updated guidelines on the single-cell pipeline would be much appreciated! Thank you!
Hi immunarch team
I have 10x TCR and BCR sequencing + 5' GEX
I have several samples
For one sample I know I should do like this
From
5' GEX data
I have made aSeurat object
, how I can mergeSeurat with immdata_10x
object"? Thanks for an y help