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immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
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Get AIRR format data from 10x Genomics data #273

Open amufaamo opened 2 years ago

amufaamo commented 2 years ago

I want to convert 10x Genomics single cell data to AIRR format. Is it possible?

MVolobueva commented 2 years ago

Hi, @amufaamo !

Why do you need to convert format 10x Genomics to format AIRR? If you want to load your data in Immunarch, you could use standart immunarch function repload. It does not ideally work with single-cell data. We are currently working on imroving single-cell support.

Best regards, Maria Samokhina

amufaamo commented 2 years ago

Thank you so much for your reply.

I understood immunarch does not fully support single cell data.

2022年8月5日(金) 5:30 Maria Samokhina @.***>:

Hi, @amufaamo https://github.com/amufaamo !

Why do you need to convert format 10x Genomics to format AIRR? If you want to load your data in Immunarch, you could use standart immunarch function repload. It does not ideally work with single-cell data. We are currently working on imroving single-cell support.

Best regards, Maria Samokhina

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