Error loading examples 10x Genomics filtered contig annotations data

[ewalsh3]

Hello

I am trying to load 10x Genomics filtered_contig_annotations.csv into Immunarch using the repLoad function. I kept getting an error trying to load my own data. I thought this was because the 10x data was analyzed and processed outside of cellranger vdj and then reformatted to look like a filtered_contig_annotations.csv file. However, this does not appear to the be problem because I get the same error when trying to load the conitg annotations file from the Loading 10x Genomics Data tutorial.

Below is a screenshot the the repLoad command and the error that is produced.

Thanks Evan

[MVolobueva]

Hi, @ewalsh3 !

Thank you for using our package! I am sorry you had to deal with this inconvenience. We know that our support of 10x genomics is not ideal. And now we are focused on improving our package in this area.

I will get back to you with any updates.

Thank you so much for drawing our attention to this. Please contact us with any questions further along.

Best regards, Maria Samokhina