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immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
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mixcr of single cell data #350

Open laurie-tonon opened 1 year ago

laurie-tonon commented 1 year ago

Hi,

I have single cell BCR sequencing from 10x genomics that I analyzed with the latest version of mixcr and its dedicated preset 10x-vdj-bcr. I would like to explore the results with immunarch but when I load the clones file, each cell is considered as a clone and the resulted clonotype are false. Is there a way to load these data into immunarch?

Thanks a lot.

laurie-tonon commented 1 year ago

Hi,

does anyone know how to use mixcr and immunarch with single cell data?

Thanks