Alexander230
commented
1 year ago Hi, @WesAbplanalp!
I'm Aleksandr Popov, a developer of Immunarch package. Thank you for using our software!
This problem looks like some libraries in your system are outdated. If R and Immunarch are installed in conda environment, try to update conda packages first, like described here: https://stackoverflow.com/a/44072944/1554282
Also, try to update all R packages like described here https://www.r-bloggers.com/2014/11/update-all-user-installed-r-packages-again/
Also, make sure that you use R version 4.0 or later.
Best regards, Aleksandr
This tool looks great and I can't wait to use it!
Unfortunately, I am having a problem with file formatting or transfer. I am loading ImmunoSeq TCRB data files (.TSV) using the repLoad function but consistently have an error. I have tried this with "standard" ImmunoSeq export file formats and the v2 export version. I get the same error for both file formats, though. If I just set the file path folder I also get this problem.
Using the following command: immdata <- repLoad('/media/Helios_scStorage/Wesley/TCR.info/Adaptive.2021.retry.v2/2021HC16_TCRB.tsv')
I get the following error: == Step 1/3: loading repertoire files... ==
Processing "" ...
-- [1/1] Parsing "/media/Helios_scStorage/Wesley/TCR.info/Adaptive.2021.retry.v2/2021HC16_TCRB.tsv" -- immunoseq
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/home/wesley/miniconda3/envs/Seurat4/lib/R/library/vroom/libs/vroom.so':
/usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.30' not found (required by /home/wesley/miniconda3/envs/Seurat4/lib/R/library/vroom/libs/vroom.so)
Any insights would helpful! I can also provide a sample file if this helps!