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immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
312 stars 66 forks source link

VDJ usage #360

Open B10inform opened 1 year ago

B10inform commented 1 year ago

❓ Questions and Help

We have a set of listed tutorials available on the website. Immunarch looks great and easy to work with.

I was wondering if there is any way immunarch can extract VDJ usage in a single file. For sample A1 something like this:

A1 IGHV3 IGHJ1 IGHD1 2 A1 IGHV4 IGHJ6 IGHD1 3 A1 IGHV3 IGHJ6 IGHD1 50 A1 IGHV3 IGHJ5 IGHD2 94 A1 IGHV3 IGHJ4 IGHD6 36 A1 IGHV3 IGHJ3 IGHD6 NA A1 IGHV3 IGHJ2 IGHD1 14

Thanks

B10inform commented 1 year ago

Is there a way Immunarch can output VDJ pairing relation?