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immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
312 stars 66 forks source link

Single cell TCRSeq #396

Open synatkeamsk opened 9 months ago

synatkeamsk commented 9 months ago

❓ Questions and Help

We have a set of listed tutorials available on the website.

Dear Authors, Thanks for creating immunarch. I have 10X single cell TCRseq data 9 patients slit into three groups. I read your tutorial at https://immunarch.com/articles/ and was able to successfully lead 10X data individually one by one. However, once it comes to analyzing all of them together for basic analysis, do you have the tutorial how to combine all of them, name the sample, name the group, gender and status etc. I tried to name it in Basic Analysis section, but it was not right with output. I do not know how to do it and appreciate if you could guide me with some codes. I have attached my work a bit. Apologize for hiding sampleid.

Also, do you have a section for integration of single cell RNAseq and single cell TCRseq? I could not find that section. I hope you could help. Have a nice day!

Kind Regards,

synat, TCR

vadimnazarov commented 8 months ago

Dear Synat,

Please please share with me ifif you have a metadata.txt file with your repertoire files.