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immunomind / immunarch

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
https://immunarch.com
Apache License 2.0
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Cellranger Data Loading #406

Open bshim181 opened 7 months ago

bshim181 commented 7 months ago

While loading the cellranger data (10X), this is the error I encounter.

-- [4/14] Parsing "/jsimonlab/users/bshim/Shuntaro_scRNA_TCR/Pool142_Cellranger/Pool142_Pt1_R/outs/all_contig.bam.bai" -- Warning: line 1 appears to contain an embedded nulError in stri_trim_both(string) : invalid UTF-8 byte sequence detected; try calling stri_enc_toutf8()

Where might this error arise from, and what would the be the solution to fix the issue in loading the dataset?

annemarijnkramer commented 7 months ago

I have run into the same issue, would appreciate help in getting it solved! Many thanks!

Error in stri_trim_both(string) : invalid UTF-8 byte sequence detected; try calling stri_enc_toutf8() In addition: Warning message: In readLines(f, 1) : line 1 appears to contain an embedded nul