immunoteam / ukb_tumor

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Survival analysis of PTVs (tumors) #10

Open BagiLaura00 opened 7 months ago

BagiLaura00 commented 7 months ago

First timepoint: diagnosis Second timepoint: current date or death Event: if dead, 1; if alive, 0 For PTV burdens we made 3 different analysis: First analysis: In the first analysis the PTV burdens were cut off at the median, that is how we got the two group: Low and High burden. PTV_burden_g1_surv_cancer Second analysis: In the second analysis the PTV burdens were categorized into 3 groups: Low: 1 to 8; High: from 19 to 84; Medium: the values between 8 and 19. PTV_burden_g2_surv_cancer Third analysis: In the third analysis the PTV burdens was categorized into 3 groups in a similar way to the second analisys. Low: from 1 to 6; High: from 30 to 84; Medium: the values between 6 and 30. PTV_burden_g3_surv_cancer

+1. We made a survival analysis for all tumors too: PTV_cancer_all_surv PTV group 1 PTV_g1_tumor_surv PTV group 2 PTV_g2_tumor_surv PTV group 3 PTV_g3_tumor_surv