immunoteam / ukb_tumor

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Cumulative incidence analysis for tumors #15

Open BagiLaura00 opened 2 months ago

BagiLaura00 commented 2 months ago

Universal PTV: Cutoffs are based on all patients. There are 2 groups: 90% below and 90% above. Female low PTV burden: green Female high PTV burden: purple Male low PTV burden: blue Male high PTV burden: red Analysis for all tumors: PTV_uni_can_all

Analysis for tumor types: Tumor types based on ICD10 codes. Have results: Thyroid F/M, Hodgkin lymphoma M, Liver M, Pancreas M PTV_uni_inc

BagiLaura00 commented 2 months ago

Tumor specific PTVs: Cutoffs are based on patients with given cancer. There are 2 groups: 90% below and 90% above. Female low PTV burden: green Female high PTV burden: purple Male low PTV burden: blue Male high PTV burden: red

Analysis for tumor types: Tumor types based on ICD10 codes. Has results: Lung M, Thyroid F/M, Hodgkin lymphoma M, Liver M, Pancreas M PTV_can_inc

BagiLaura00 commented 2 months ago

PTVim groups There are 2 groups based on PTV burden: 0 PTV, 1 or more PTV. Female low PTV burden: green Female high PTV burden: purple Male low PTV burden: blue Male high PTV burden: red Analysis for all tumor: PTVim_can_all Analysis for tumor types: Tumor types based on ICD10 codes. Have results: Non-hodgkin lymphpma M, Thyroid M PTVim_can_inc

BagiLaura00 commented 2 months ago

PTVpli groups There are 2 groups based on PTV burden: 0 PTV, 1 or more PTV. Female low PTV burden: green Female high PTV burden: purple Male low PTV burden: blue Male high PTV burden: red Analysis for all tumor: PTVpli_can_all

Analysis for tumor types: Tumor types are based on ICD10 codes. Have results: Mesothelioma M, Ovary F, Lung F, Testis M, Cervix F, Tyhroid M, Hodgkin lymphoma M, Larynx M, Pancreas M PTVpli_can_inc

BagiLaura00 commented 2 months ago

PTVtsg gruop There are 2 groups based on PTV burden: 0 PTV, 1 or more PTV. Female low PTV burden: green Female high PTV burden: purple Male low PTV burden: blue Male high PTV burden: red

Analysis for all tumor: PTVtsg_can_all

Analysis for tumor types: Tumor types are based on ICD10 codes. Have results: Colon M, Breast F, Leukemia M/F, Bladder F, Mesothelioma M, Ovary F, Lung F, Brain/CNS M, Thyroid M/F, Esophagus F, Liver F, Hodgkin lymphoma M, Stomach F, Cervix F, Testis M, Pancreas M PTVtsg_inc