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imodpasteur / ANNA-PALM

Accelerating Single Molecule Localization Microscopy with Deep Learning
https://annapalm.pasteur.fr/
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Cannot view the error map #4

Open MaximeMaW opened 6 years ago

MaximeMaW commented 6 years ago

Hello,

The paper mentions a way to quantify the error made by the reconstruction software. How can I display it? This feature would be very helpful to assess the quality of the super-resolved image.

oeway commented 6 years ago

Hi, that's a good question. Currently, this feature is only available in the source code. For the web app as well as the imagej plugin, if we want to support that, we will have to have a way to align the widefield image with the super-resolution image. That's the part which is missing currently in the web app and the imagej plugin.

Currently in the python code, we used a registration plugin(https://pypi.python.org/pypi/imreg_dft/) to do that. Once we get something like that to work in imagej and js, it will be easy to have the error map supported.

Thanks for the feature request.