search

imodpasteur / ZOLA-3D

Zernike Optimized Localization Algorithm for 3D single molecule localizations
GNU General Public License v3.0
14 stars 3 forks source link

CUDA 10 #6

Closed akurz-wue closed 5 years ago

akurz-wue commented 5 years ago

Has anyone ever tried using higher versions of CUDA than 8 and succeeded? End of the year we spent some money for the new RTX 2080 Ti and it seems that only CUDA 10 is supported (no lower versions). I fear that this might be a dead end... :(

benoitbenoit commented 5 years ago

Hello, I found libraries pre-compiled for linux and cuda10. You can find them in release section: https://github.com/imodpasteur/ZOLA-3D/releases/download/0.2.2/JCuda.libraries.zip Best, Benoit L

akurz-wue commented 5 years ago

I always get the following error:

(Fiji Is Just) ImageJ 2.0.0-rc-69/1.52i; Java 1.8.0_172 [64-bit]; Windows 10 10.0; 44MB of 24440MB (<1%)

java.lang.UnsatisfiedLinkError: Error while loading native library "JCudaRuntime-0.9.0-windows-x86_64" Operating system name: Windows 10 Architecture : amd64 Architecture bit size: 64 ---(start of nested stack traces)--- Stack trace from the attempt to load the library as a file: java.lang.UnsatisfiedLinkError: no JCudaRuntime-0.9.0-windows-x86_64 in java.library.path at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1867) at java.lang.Runtime.loadLibrary0(Runtime.java:870) at java.lang.System.loadLibrary(System.java:1122) at jcuda.LibUtils.loadLibrary(LibUtils.java:143) at jcuda.runtime.JCuda.initialize(JCuda.java:422) at jcuda.runtime.JCuda.(JCuda.java:406) at org.pasteur.imagej.cuda.MyCudaStream.init(MyCudaStream.java:58) at org.pasteur.imagej.ZOLA.phaseoptim(ZOLA.java:1687) at org.pasteur.imagej.ZOLA.run(ZOLA.java:522) at ij.IJ.runUserPlugIn(IJ.java:228) at ij.IJ.runPlugIn(IJ.java:192) at ij.Executer.runCommand(Executer.java:137) at ij.Executer.run(Executer.java:66) at java.lang.Thread.run(Thread.java:748) Stack trace from the attempt to load the library as a resource: java.io.IOException: No resource found with name '/lib/JCudaRuntime-0.9.0-windows-x86_64.dll' at jcuda.LibUtils.writeResourceToFile(LibUtils.java:323) at jcuda.LibUtils.loadLibraryResource(LibUtils.java:255) at jcuda.LibUtils.loadLibrary(LibUtils.java:158) at jcuda.runtime.JCuda.initialize(JCuda.java:422) at jcuda.runtime.JCuda.(JCuda.java:406) at org.pasteur.imagej.cuda.MyCudaStream.init(MyCudaStream.java:58) at org.pasteur.imagej.ZOLA.phaseoptim(ZOLA.java:1687) at org.pasteur.imagej.ZOLA.run(ZOLA.java:522) at ij.IJ.runUserPlugIn(IJ.java:228) at ij.IJ.runPlugIn(IJ.java:192) at ij.Executer.runCommand(Executer.java:137) at ij.Executer.run(Executer.java:66) at java.lang.Thread.run(Thread.java:748) ---(end of nested stack traces)---

at jcuda.LibUtils.loadLibrary(LibUtils.java:193)
at jcuda.runtime.JCuda.initialize(JCuda.java:422)
at jcuda.runtime.JCuda.<clinit>(JCuda.java:406)
at org.pasteur.imagej.cuda.MyCudaStream.init(MyCudaStream.java:58)
at org.pasteur.imagej.ZOLA.phaseoptim(ZOLA.java:1687)
at org.pasteur.imagej.ZOLA.run(ZOLA.java:522)
at ij.IJ.runUserPlugIn(IJ.java:228)
at ij.IJ.runPlugIn(IJ.java:192)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:748)
benoitbenoit commented 5 years ago

I seems in the jars folder of fiji, you have [jcuda-0.9.0.jar, jcublas-0.9.0.jar, ...] files. Please, remove them and replace them by [jcuda-10.0.0.jar, jcublas-10.0.0.jar, ...] if your cuda version is 10.

akurz-wue commented 5 years ago

you are right, I forgot to remove the 0.9 versions... but nevertheless I get an error: java.lang.UnsatisfiedLinkError: Error while loading native library "JCudaRuntime-10.0.0-windows-x86_64" Operating system name: Windows 10 Architecture : amd64 Architecture bit size: 64 ---(start of nested stack traces)--- Stack trace from the attempt to load the library as a file: java.lang.UnsatisfiedLinkError: no JCudaRuntime-10.0.0-windows-x86_64 in java.library.path .....

akurz-wue commented 5 years ago

ah I guess the lib files have to be converted to .dll?

benoitbenoit commented 5 years ago

Sorry, I realize I put both 0.9.0 and 10.0.0 version in the folder you downloaded. The previous problem was my fault. Also, I provided Linux libraries and you use windows.

Please, download again the libraries (https://github.com/imodpasteur/ZOLA-3D/releases/download/0.2.2/JCuda.libraries.zip) and copy "JCuda.libraries/JCuda_10/windows/lib" in your fiji folder.

It should be fine know Best, benoit L

akurz-wue commented 5 years ago

you are the man! :D it works! thanks a lot!! best, andreas

benoitbenoit commented 5 years ago

Thank you, Enjoy ZOLA-3D Best, Benoit Lelandais