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imr-framework / minTE

Open-source minimal echo time sequences for reproducible MRI
GNU General Public License v3.0
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No funciona minTE Quick Start #2

Open cenarius1985 opened 6 months ago

cenarius1985 commented 6 months ago

Estimados, no funciona el colaboratory presenta errores en el punto de importaciones, no pasa de este punto import numpy as np from minTE.sequences.write_UTE_2D import from minTE.sequences.write_UTE_3D import from minTE.sequences.write_CODE import * import plotly.graph_objects as go from plotly.subplots import make_subplots from google.colab import files import numpy as np from pypulseq.Sequence.sequence import Sequence import math

sairamgeethanath commented 6 months ago

Can you please report the bug is English for me to debug?

Sairam Geethanath, Ph.D. “There are plenty of compelling reasons to push MRI to be more powerful, but that’s one facet of advancing the field. Another is delivering it to the world.”

On Mon, Mar 4, 2024 at 9:02 AM cenarius1985 @.***> wrote:

Estimados, no funciona el colaboratory presenta errores en el punto de importaciones, no pasa de este punto import numpy as np from minTE.sequences.write_UTE_2D import from minTE.sequences.write_UTE_3D import from minTE.sequences.write_CODE import * import plotly.graph_objects as go from plotly.subplots import make_subplots from google.colab import files import numpy as np from pypulseq.Sequence.sequence import Sequence import math

— Reply to this email directly, view it on GitHub https://github.com/imr-framework/minTE/issues/2, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHLQWAOTAOGYK5PDIF5F5KDYWR5HRAVCNFSM6AAAAABEFIGDW6VHI2DSMVQWIX3LMV43ASLTON2WKOZSGE3DMOJSGM3TKOA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

cenarius1985 commented 6 months ago

the first problem: Collecting git+https://github.com/imr-framework/minTE.git@e91d9cc141f2be07e2e794157f77633121ee8ac8 Cloning https://github.com/imr-framework/minTE.git (to revision e91d9cc141f2be07e2e794157f77633121ee8ac8) to /tmp/pip-req-build-lhowmpue Running command git clone --filter=blob:none --quiet https://github.com/imr-framework/minTE.git /tmp/pip-req-build-lhowmpue Running command git rev-parse -q --verify 'sha^e91d9cc141f2be07e2e794157f77633121ee8ac8' Running command git fetch -q https://github.com/imr-framework/minTE.git e91d9cc141f2be07e2e794157f77633121ee8ac8 Running command git checkout -q e91d9cc141f2be07e2e794157f77633121ee8ac8 Resolved https://github.com/imr-framework/minTE.git to commit e91d9cc141f2be07e2e794157f77633121ee8ac8 Preparing metadata (setup.py) ... done INFO: pip is looking at multiple versions of minte to determine which version is compatible with other requirements. This could take a while. ERROR: Ignored the following versions that require a different python version: 1.6.2 Requires-Python >=3.7,<3.10; 1.6.3 Requires-Python >=3.7,<3.10; 1.7.0 Requires-Python >=3.7,<3.10; 1.7.1 Requires-Python >=3.7,<3.10 ERROR: Could not find a version that satisfies the requirement scipy==1.6.3 (from minte) (from versions: 0.8.0, 0.9.0, 0.10.0, 0.10.1, 0.11.0, 0.12.0, 0.12.1, 0.13.0, 0.13.1, 0.13.2, 0.13.3, 0.14.0, 0.14.1, 0.15.0, 0.15.1, 0.16.0, 0.16.1, 0.17.0, 0.17.1, 0.18.0, 0.18.1, 0.19.0, 0.19.1, 1.0.0, 1.0.1, 1.1.0, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.3.0, 1.3.1, 1.3.2, 1.3.3, 1.4.0, 1.4.1, 1.5.0, 1.5.1, 1.5.2, 1.5.3, 1.5.4, 1.6.0, 1.6.1, 1.7.2, 1.7.3, 1.8.0rc1, 1.8.0rc2, 1.8.0rc3, 1.8.0rc4, 1.8.0, 1.8.1, 1.9.0rc1, 1.9.0rc2, 1.9.0rc3, 1.9.0, 1.9.1, 1.9.2, 1.9.3, 1.10.0rc1, 1.10.0rc2, 1.10.0, 1.10.1, 1.11.0rc1, 1.11.0rc2, 1.11.0, 1.11.1, 1.11.2, 1.11.3, 1.11.4, 1.12.0rc1, 1.12.0rc2, 1.12.0) ERROR: No matching distribution found for scipy==1.6.3

cenarius1985 commented 6 months ago

second: --------------------------------------------------------------------------- ModuleNotFoundError Traceback (most recent call last) in <cell line: 1>() ----> 1 from minTE.sequences.write_UTE_2D import 2 from minTE.sequences.write_UTE_3D import 3 from minTE.sequences.write_CODE import * 4 import plotly.graph_objects as go 5 from plotly.subplots import make_subplots

ModuleNotFoundError: No module named 'minTE'

NOTE: If your import is failing due to a missing package, you can manually install dependencies using either !pip or !apt.

To view examples of installing some common dependencies, click the "Open Examples" button below.

cenarius1985 commented 6 months ago

no_folder no found the forlders and -------------------------------------------------------------------------- ModuleNotFoundError Traceback (most recent call last) in <cell line: 1>() ----> 1 from minTE.sequences.write_UTE_2D import 2 from minTE.sequences.write_UTE_3D import 3 from minTE.sequences.write_CODE import * 4 import plotly.graph_objects as go 5 from plotly.subplots import make_subplots

ModuleNotFoundError: No module named 'minTE'

NOTE: If your import is failing due to a missing package, you can manually install dependencies using either !pip or !apt.

To view examples of installing some common dependencies, click the "Open Examples" button below.

cenarius1985 commented 6 months ago

image no found the repository in link

cenarius1985 commented 6 months ago

I'm using a Jupyter notebook in Colab, but it won't get past the imports. It throws an error with the numpy library, the error is that np.float does not exist. Additionally, the necessary libraries do not install. I used the command pip install -r requirements.txt with the following requirements.

cenarius1985 commented 6 months ago

I am reaching out to seek your valuable assistance with a matter that is crucial to my current project. I am in the process of setting up MINTE and am tasked with implementing a UTE sequence on a 0.55 tesla machine. Given the complexity and importance of this task, I would greatly appreciate any guidance, advice, or support you could offer.

Thank you very much for considering my request.

sairamgeethanath commented 6 months ago

Hi,

I am a little held up until March 17th but am happy to support you getting started after that. We can schedule a virtual meeting and have it set up. How familiar are you with Python?

Best, Sairam

On Mon, Mar 4, 2024 at 1:57 PM cenarius1985 @.***> wrote:

I am reaching out to seek your valuable assistance with a matter that is crucial to my current project. I am in the process of setting up MINTE and am tasked with implementing a UTE sequence on a 0.55 tesla machine. Given the complexity and importance of this task, I would greatly appreciate any guidance, advice, or support you could offer.

Thank you very much for considering my request.

— Reply to this email directly, view it on GitHub https://github.com/imr-framework/minTE/issues/2#issuecomment-1977254122, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHLQWAMXGVUNQXK36WFDKX3YWS73HAVCNFSM6AAAAABEFIGDW6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNZXGI2TIMJSGI . You are receiving this because you commented.Message ID: @.***>

-- Sairam Geethanath, Ph.D. “There are plenty of compelling reasons to push MRI to be more powerful, but that’s one facet of advancing the field. Another is delivering it to the world.”

cenarius1985 commented 6 months ago

ok, my email: fernando.ramirez.sarmiento@gmail.com , second year doctoral student applied computer engineering.

cenarius1985 commented 5 months ago

I already found a way to make it work, they must automate the installation requirements better since it does not work at first instance, personally I was missing vc c++ compiler vs_BuildTools.exe https://download.visualstudio.microsoft.com and it must be installed in an environment Individually, I would suggest generating a docker container with everything necessary to function.