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inab / SmartRNASeqCaller

SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data
GNU Lesser General Public License v3.0
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Running smartRNASeqCaller on hg38 #8

Closed travelanywhere closed 4 years ago

travelanywhere commented 4 years ago

Is there a way to run it on data generated with hg38 in stead of hg19?

mbosio85 commented 4 years ago

Hi! There is a way which passes by building the resource files for hg38 as in #1 In the upcoming days I'll generate these files and add them in the resource folder but for the moment you may follow those steps.

mbosio85 commented 4 years ago

Hello, I added the bed files in resources/hg38 so it should be easier to apply the tool. Cheers Mattia