Add documentation for each application step - Githubissues

inab / Wetlab2Variations

Wetlab2Variations Workflow Demonstrator

Apache License 2.0

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Add documentation for each application step #3

Closed susheel closed 5 years ago

susheel commented 5 years ago

Document the application steps:

Docker Container to be used
Command to be executed
Resource requirements (CPU/RAM)
Input Location
Reference Data Location

Application Steps:

[ ] cutadapt (v.1.18) --> /doc/bwa-mem-v.0.7.17.md or Wiki page
[ ] bwa-mem (v.0.7.17) --> /doc/bwa-mem-v.0.7.17.md or Wiki page
[ ] Sambamba (v.0.6.8 ) --> /doc/Sambamba-v.0.6.8.md or Wiki page
[ ] Picard (v.2.18.25) --> /doc/Picard-v.2.18.25.md or Wiki page
[ ] GATK (v.3.6-0) --> /doc/GATK-v.3.6-0.md or Wiki page
[ ] fastqc (v.0.11.8) --> /doc/fastqc-v.0.11.8.md or Wiki page

susheel commented 5 years ago

@rtonda Could you add this from the Google doc?