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inbo / n2khab

R package with preprocessing functions and standard reference data for Flemish Natura 2000 (N2K) habitat (HAB) analyses
https://inbo.github.io/n2khab
GNU General Public License v3.0
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Proposal of some updates to read_habitatmap_xxx() #140

Closed florisvdh closed 3 years ago

florisvdh commented 3 years ago

Also addressed some remaining parts of issue #117. Specifically I propose for the 2018 versions to reorder the xxx_types tibble columns for stdized/terr according to the order of the 2020 datasource version, where this was done in a more logical way. Do you agree? - Also pinging @ToonHub for this one.

Commit 9eff6ec on documenting the key goes back to https://github.com/inbo/n2khab-preprocessing/pull/50#issuecomment-781267400:

Importantly, such new approach of the habitatmap_types table (the non-spatial table in the processed data source) will have to be documented both in the Zenodo metadata (for the new version at least) and read_habitatmap_stdized(). As far as I can tell from habitatmap_stdized metadata it was not (yet) documented what is the primary key for habitatmap_types, but I presume it was polygon_id, type. Now it will become polygon_id, type, certain.

Results of testing the functions ``` r library(n2khab) filepaths_2018 <- file.path(fileman_up("n2khab_data"), c("10_raw/habitatmap_2018", "20_processed/habitatmap_stdized_2018/habitatmap_stdized.gpkg", "20_processed/habitatmap_terr_2018/habitatmap_terr.gpkg")) ############################################################# # 2020 ############################################################# read_habitatmap() #> Simple feature collection with 646589 features and 30 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 21991.38 ymin: 153058.3 xmax: 258871.8 ymax: 244027.3 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 646,589 x 31 #> polygon_id eval eenh1 eenh2 eenh3 eenh4 eenh5 eenh6 eenh7 eenh8 v1 v2 #> * #> 1 000098_v20… m b #> 2 000132_v20… m bl #> 3 000135_v20… m bl #> 4 000136_v20… m bl #> 5 000142_v20… m bl #> 6 000150_v20… m bl #> 7 000297_v20… m bl #> 8 000991_v20… m bl #> 9 000999_v20… m bl #> 10 001000_v20… m bl #> # … with 646,579 more rows, and 19 more variables: v3 , source , #> # info , bwk_label , hab1 , phab1 , hab2 , #> # phab2 , hab3 , phab3 , hab4 , phab4 , hab5 , #> # phab5 , source_hab , source_phab , hab_legend , #> # area_m2 , geometry read_habitatmap(filter_hab = TRUE) #> Simple feature collection with 87781 features and 30 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 22003.2 ymin: 153084.4 xmax: 258871.8 ymax: 243446.1 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 87,781 x 31 #> polygon_id eval eenh1 eenh2 eenh3 eenh4 eenh5 eenh6 eenh7 eenh8 v1 v2 #> * #> 1 130153_v20… mz qb pins un #> 2 130815_v20… mz weg kt(q… #> 3 137826_v20… w hrb #> 4 170624_v20… w mru kbfr kbcr #> 5 203261_v20… wz hr mr #> 6 204352_v20… wz kd hr sp sz #> 7 204376_v20… wz kd kbp sg #> 8 205188_v20… wz kt(s… khu kbq kt(h… #> 9 205291_v20… wz ku sp #> 10 205756_v20… wz lhi sf #> # … with 87,771 more rows, and 19 more variables: v3 , source , #> # info , bwk_label , hab1 , phab1 , hab2 , #> # phab2 , hab3 , phab3 , hab4 , phab4 , hab5 , #> # phab5 , source_hab , source_phab , hab_legend , #> # area_m2 , geometry read_habitatmap_stdized() #> $habitatmap_polygons #> Simple feature collection with 87781 features and 2 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 22003.2 ymin: 153084.4 xmax: 258871.8 ymax: 243446.1 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 87,781 x 3 #> polygon_id description_orig geom #> * #> 1 130153_v20… 70% 9120_qb; 30% … (((150669.4 227248.6, 150668.1 227242.9, 1505… #> 2 130815_v20… 70% gh; 30% 9160 (((258338.4 158696.1, 258336.5 158693.5, 2583… #> 3 137826_v20… 100% 6430,rbbhf (((181587.2 234938, 181613.1 234933.1, 181646… #> 4 170624_v20… 100% rbbmr (((145876.8 229686.8, 145701.7 229680.6, 1456… #> 5 203261_v20… 70% gh; 30% rbbmr (((117137.2 210307.9, 117136.3 210288.3, 1171… #> 6 204352_v20… 80% gh; 20% rbbsp (((116357.3 159278.3, 116340.5 159259.8, 1163… #> 7 204376_v20… 90% gh; 10% rbbsg (((116110.1 210545.5, 116102.4 210541.1, 1160… #> 8 205188_v20… 60% rbbsp; 40% gh (((232114.7 161594.5, 232122.7 161590.5, 2321… #> 9 205291_v20… 70% gh; 30% rbbsp (((191253.5 160641.5, 191254.8 160636.1, 1912… #> 10 205756_v20… 70% gh; 30% rbbsf (((216258.8 156749, 216260.9 156750, 216287.7… #> # … with 87,771 more rows #> #> $habitatmap_types #> # A tibble: 110,485 x 5 #> polygon_id type certain code_orig phab #> #> 1 000038_v2016 91E0_va TRUE 91E0_va 100 #> 2 000043_v2016 9130_end TRUE 9130_end 100 #> 3 000064_v2020 9130_end TRUE 9130_end 100 #> 4 000132_v2016 9130_end TRUE 9130_end 100 #> 5 000204_v2016 91E0_vn TRUE 91E0_vn 100 #> 6 000255_v2016 91E0_vc TRUE 91E0_vc 100 #> 7 000297_v2016 rbbsp TRUE rbbsp 10 #> 8 000311_v2016 9130_end TRUE 9130_end 70 #> 9 000311_v2016 rbbsp TRUE rbbsp 30 #> 10 000390_v2016 91E0_vn TRUE 91E0_vn 70 #> # … with 110,475 more rows read_habitatmap_terr() #> $habitatmap_terr_polygons #> Simple feature collection with 78602 features and 4 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 22003.2 ymin: 153084.4 xmax: 258871.8 ymax: 243351.8 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 78,602 x 5 #> polygon_id description_orig description source geom #> * #> 1 130153_v20… 70% 9120_qb; 30%… 70% 9120_q… habita… (((150669.4 227248.6, 1506… #> 2 130815_v20… 70% gh; 30% 9160 70% gh; 30… habita… (((258338.4 158696.1, 2583… #> 3 137826_v20… 100% 6430,rbbhf 100% 6430_… habita… (((181587.2 234938, 181613… #> 4 170624_v20… 100% rbbmr 100% rbbmr habita… (((145876.8 229686.8, 1457… #> 5 203261_v20… 70% gh; 30% rbbmr 70% gh; 30… habita… (((117137.2 210307.9, 1171… #> 6 204352_v20… 80% gh; 20% rbbsp 80% gh; 20… habita… (((116357.3 159278.3, 1163… #> 7 204376_v20… 90% gh; 10% rbbsg 90% gh; 10… habita… (((116110.1 210545.5, 1161… #> 8 205188_v20… 60% rbbsp; 40% gh 60% rbbsp;… habita… (((232114.7 161594.5, 2321… #> 9 205291_v20… 70% gh; 30% rbbsp 70% gh; 30… habita… (((191253.5 160641.5, 1912… #> 10 205756_v20… 70% gh; 30% rbbsf 70% gh; 30… habita… (((216258.8 156749, 216260… #> # … with 78,592 more rows #> #> $habitatmap_terr_types #> # A tibble: 99,784 x 6 #> polygon_id type certain code_orig phab source #> #> 1 000038_v2016 91E0_va TRUE 91E0_va 100 habitatmap_stdized #> 2 000043_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 3 000064_v2020 9130_end TRUE 9130_end 100 habitatmap_stdized #> 4 000132_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 5 000204_v2016 91E0_vn TRUE 91E0_vn 100 habitatmap_stdized #> 6 000255_v2016 91E0_vc TRUE 91E0_vc 100 habitatmap_stdized #> 7 000297_v2016 rbbsp TRUE rbbsp 10 habitatmap_stdized #> 8 000311_v2016 9130_end TRUE 9130_end 70 habitatmap_stdized #> 9 000311_v2016 rbbsp TRUE rbbsp 30 habitatmap_stdized #> 10 000390_v2016 91E0_vn TRUE 91E0_vn 70 habitatmap_stdized #> # … with 99,774 more rows read_habitatmap_terr(keep_aq_types = FALSE) #> $habitatmap_terr_polygons #> Simple feature collection with 78602 features and 4 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 22003.2 ymin: 153084.4 xmax: 258871.8 ymax: 243351.8 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 78,602 x 5 #> polygon_id description_orig description source geom #> * #> 1 130153_v20… 70% 9120_qb; 30%… 70% 9120_q… habita… (((150669.4 227248.6, 1506… #> 2 130815_v20… 70% gh; 30% 9160 70% gh; 30… habita… (((258338.4 158696.1, 2583… #> 3 137826_v20… 100% 6430,rbbhf 100% 6430_… habita… (((181587.2 234938, 181613… #> 4 170624_v20… 100% rbbmr 100% rbbmr habita… (((145876.8 229686.8, 1457… #> 5 203261_v20… 70% gh; 30% rbbmr 70% gh; 30… habita… (((117137.2 210307.9, 1171… #> 6 204352_v20… 80% gh; 20% rbbsp 80% gh; 20… habita… (((116357.3 159278.3, 1163… #> 7 204376_v20… 90% gh; 10% rbbsg 90% gh; 10… habita… (((116110.1 210545.5, 1161… #> 8 205188_v20… 60% rbbsp; 40% gh 60% rbbsp;… habita… (((232114.7 161594.5, 2321… #> 9 205291_v20… 70% gh; 30% rbbsp 70% gh; 30… habita… (((191253.5 160641.5, 1912… #> 10 205756_v20… 70% gh; 30% rbbsf 70% gh; 30… habita… (((216258.8 156749, 216260… #> # … with 78,592 more rows #> #> $habitatmap_terr_types #> # A tibble: 96,201 x 6 #> polygon_id type certain code_orig phab source #> #> 1 000038_v2016 91E0_va TRUE 91E0_va 100 habitatmap_stdized #> 2 000043_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 3 000064_v2020 9130_end TRUE 9130_end 100 habitatmap_stdized #> 4 000132_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 5 000204_v2016 91E0_vn TRUE 91E0_vn 100 habitatmap_stdized #> 6 000255_v2016 91E0_vc TRUE 91E0_vc 100 habitatmap_stdized #> 7 000297_v2016 rbbsp TRUE rbbsp 10 habitatmap_stdized #> 8 000311_v2016 9130_end TRUE 9130_end 70 habitatmap_stdized #> 9 000311_v2016 rbbsp TRUE rbbsp 30 habitatmap_stdized #> 10 000390_v2016 91E0_vn TRUE 91E0_vn 70 habitatmap_stdized #> # … with 96,191 more rows read_habitatmap_terr(keep_aq_types = FALSE, drop_7220 = FALSE) #> $habitatmap_terr_polygons #> Simple feature collection with 78602 features and 4 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 22003.2 ymin: 153084.4 xmax: 258871.8 ymax: 243351.8 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 78,602 x 5 #> polygon_id description_orig description source geom #> * #> 1 130153_v20… 70% 9120_qb; 30%… 70% 9120_q… habita… (((150669.4 227248.6, 1506… #> 2 130815_v20… 70% gh; 30% 9160 70% gh; 30… habita… (((258338.4 158696.1, 2583… #> 3 137826_v20… 100% 6430,rbbhf 100% 6430_… habita… (((181587.2 234938, 181613… #> 4 170624_v20… 100% rbbmr 100% rbbmr habita… (((145876.8 229686.8, 1457… #> 5 203261_v20… 70% gh; 30% rbbmr 70% gh; 30… habita… (((117137.2 210307.9, 1171… #> 6 204352_v20… 80% gh; 20% rbbsp 80% gh; 20… habita… (((116357.3 159278.3, 1163… #> 7 204376_v20… 90% gh; 10% rbbsg 90% gh; 10… habita… (((116110.1 210545.5, 1161… #> 8 205188_v20… 60% rbbsp; 40% gh 60% rbbsp;… habita… (((232114.7 161594.5, 2321… #> 9 205291_v20… 70% gh; 30% rbbsp 70% gh; 30… habita… (((191253.5 160641.5, 1912… #> 10 205756_v20… 70% gh; 30% rbbsf 70% gh; 30… habita… (((216258.8 156749, 216260… #> # … with 78,592 more rows #> #> $habitatmap_terr_types #> # A tibble: 96,269 x 6 #> polygon_id type certain code_orig phab source #> #> 1 000038_v2016 91E0_va TRUE 91E0_va 100 habitatmap_stdized #> 2 000043_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 3 000064_v2020 9130_end TRUE 9130_end 100 habitatmap_stdized #> 4 000132_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 5 000204_v2016 91E0_vn TRUE 91E0_vn 100 habitatmap_stdized #> 6 000255_v2016 91E0_vc TRUE 91E0_vc 100 habitatmap_stdized #> 7 000297_v2016 rbbsp TRUE rbbsp 10 habitatmap_stdized #> 8 000311_v2016 9130_end TRUE 9130_end 70 habitatmap_stdized #> 9 000311_v2016 rbbsp TRUE rbbsp 30 habitatmap_stdized #> 10 000390_v2016 91E0_vn TRUE 91E0_vn 70 habitatmap_stdized #> # … with 96,259 more rows ############################################################# # 2018 ############################################################# read_habitatmap(filepaths_2018[1], version = "habitatmap_2018") #> Simple feature collection with 618147 features and 30 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 21991.38 ymin: 153058.3 xmax: 258871.8 ymax: 244027.3 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 618,147 x 31 #> polygon_id eval eenh1 eenh2 eenh3 eenh4 eenh5 eenh6 eenh7 eenh8 v1 v2 #> * #> 1 000098_v20… m b #> 2 000132_v20… m bl #> 3 000135_v20… m bl #> 4 000136_v20… m bl #> 5 000142_v20… m bl #> 6 000150_v20… m bl #> 7 000152_v20… m bl #> 8 000154_v20… m bl #> 9 000297_v20… m bl #> 10 000805_v20… m bl #> # … with 618,137 more rows, and 19 more variables: v3 , source , #> # info , bwk_label , hab1 , phab1 , hab2 , #> # phab2 , hab3 , phab3 , hab4 , phab4 , hab5 , #> # phab5 , source_hab , source_phab , hab_legend , #> # area_m2 , geometry # error expected, since habitatmap_stdized 2018 is not in the default location read_habitatmap(filepaths_2018[1], filter_hab = TRUE, version = "habitatmap_2018") #> Error: You are trying to use habitatmap version 'habitatmap_2018' with another version of habitatmap_stdized. Specify the correct version as argument (version =) and add the corresponding files under 'n2khab_data/10_raw/habitatmap' and 'n2khab_data/20_processed/habitatmap_stdized'. read_habitatmap_stdized(filepaths_2018[2], "habitatmap_stdized_2018_v2") #> $habitatmap_polygons #> Simple feature collection with 77048 features and 2 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 22003.2 ymin: 153084.4 xmax: 258871.8 ymax: 243351.8 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 77,048 x 3 #> polygon_id description_orig geom #> * #> 1 129420_v20… 60% x; 40% 6430_hf (((242838.5 161337.3, 242842.8 161324.7, 2428… #> 2 130153_v20… 70% 9120_qb; 30% … (((150669.4 227248.6, 150668.1 227242.9, 1505… #> 3 130815_v20… 70% gh; 30% 9160 (((258338.4 158696.1, 258336.5 158693.5, 2583… #> 4 137826_v20… 100% 6430,rbbhf (((181587.2 234938, 181613.1 234933.1, 181646… #> 5 170624_v20… 100% rbbmr (((145876.8 229686.8, 145701.7 229680.6, 1456… #> 6 203261_v20… 70% gh; 30% rbbmr (((117137.2 210307.9, 117136.3 210288.3, 1171… #> 7 204352_v20… 80% gh; 20% rbbsp (((116357.3 159278.3, 116340.5 159259.8, 1163… #> 8 204376_v20… 90% gh; 10% rbbsg (((116110.1 210545.5, 116102.4 210541.1, 1160… #> 9 205188_v20… 60% rbbsp; 40% gh (((232114.7 161594.5, 232122.7 161590.5, 2321… #> 10 205291_v20… 70% gh; 30% rbbsp (((191253.5 160641.5, 191254.8 160636.1, 1912… #> # … with 77,038 more rows #> #> $habitatmap_types #> # A tibble: 98,737 x 5 #> polygon_id type certain code_orig phab #> #> 1 000038_v2016 91E0_va TRUE 91E0_va 100 #> 2 000043_v2016 9130_end TRUE 9130_end 100 #> 3 000132_v2016 9130_end TRUE 9130_end 100 #> 4 000204_v2016 91E0_vn TRUE 91E0_vn 100 #> 5 000255_v2016 91E0_vc TRUE 91E0_vc 100 #> 6 000297_v2016 rbbsp TRUE rbbsp 10 #> 7 000311_v2016 9130_end TRUE 9130_end 70 #> 8 000311_v2016 rbbsp TRUE rbbsp 30 #> 9 000390_v2016 91E0_vn TRUE 91E0_vn 70 #> 10 000390_v2016 91E0_va TRUE 91E0_va 30 #> # … with 98,727 more rows read_habitatmap_terr(filepaths_2018[3], version = "habitatmap_terr_2018_v2") #> $habitatmap_terr_polygons #> Simple feature collection with 68300 features and 4 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 22003.2 ymin: 153084.4 xmax: 258871.8 ymax: 243351.8 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 68,300 x 5 #> polygon_id description_orig description source geom #> * #> 1 129420_v20… 60% x; 40% 6430_… 60% x; 40%… habita… (((242838.5 161337.3, 2428… #> 2 130153_v20… 70% 9120_qb; 30%… 70% 9120_q… habita… (((150669.4 227248.6, 1506… #> 3 130815_v20… 70% gh; 30% 9160 70% gh; 30… habita… (((258338.4 158696.1, 2583… #> 4 137826_v20… 100% 6430,rbbhf 100% 6430_… habita… (((181587.2 234938, 181613… #> 5 170624_v20… 100% rbbmr 100% rbbmr habita… (((145876.8 229686.8, 1457… #> 6 203261_v20… 70% gh; 30% rbbmr 70% gh; 30… habita… (((117137.2 210307.9, 1171… #> 7 204352_v20… 80% gh; 20% rbbsp 80% gh; 20… habita… (((116357.3 159278.3, 1163… #> 8 204376_v20… 90% gh; 10% rbbsg 90% gh; 10… habita… (((116110.1 210545.5, 1161… #> 9 205188_v20… 60% rbbsp; 40% gh 60% rbbsp;… habita… (((232114.7 161594.5, 2321… #> 10 205291_v20… 70% gh; 30% rbbsp 70% gh; 30… habita… (((191253.5 160641.5, 1912… #> # … with 68,290 more rows #> #> $habitatmap_terr_types #> # A tibble: 87,473 x 6 #> polygon_id type certain code_orig phab source #> #> 1 000038_v2016 91E0_va TRUE 91E0_va 100 habitatmap_stdized #> 2 000043_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 3 000132_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 4 000204_v2016 91E0_vn TRUE 91E0_vn 100 habitatmap_stdized #> 5 000255_v2016 91E0_vc TRUE 91E0_vc 100 habitatmap_stdized #> 6 000297_v2016 rbbsp TRUE rbbsp 10 habitatmap_stdized #> 7 000311_v2016 9130_end TRUE 9130_end 70 habitatmap_stdized #> 8 000311_v2016 rbbsp TRUE rbbsp 30 habitatmap_stdized #> 9 000390_v2016 91E0_vn TRUE 91E0_vn 70 habitatmap_stdized #> 10 000390_v2016 91E0_va TRUE 91E0_va 30 habitatmap_stdized #> # … with 87,463 more rows read_habitatmap_terr(filepaths_2018[3], version = "habitatmap_terr_2018_v2", keep_aq_types = FALSE) #> $habitatmap_terr_polygons #> Simple feature collection with 68300 features and 4 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 22003.2 ymin: 153084.4 xmax: 258871.8 ymax: 243351.8 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 68,300 x 5 #> polygon_id description_orig description source geom #> * #> 1 129420_v20… 60% x; 40% 6430_… 60% x; 40%… habita… (((242838.5 161337.3, 2428… #> 2 130153_v20… 70% 9120_qb; 30%… 70% 9120_q… habita… (((150669.4 227248.6, 1506… #> 3 130815_v20… 70% gh; 30% 9160 70% gh; 30… habita… (((258338.4 158696.1, 2583… #> 4 137826_v20… 100% 6430,rbbhf 100% 6430_… habita… (((181587.2 234938, 181613… #> 5 170624_v20… 100% rbbmr 100% rbbmr habita… (((145876.8 229686.8, 1457… #> 6 203261_v20… 70% gh; 30% rbbmr 70% gh; 30… habita… (((117137.2 210307.9, 1171… #> 7 204352_v20… 80% gh; 20% rbbsp 80% gh; 20… habita… (((116357.3 159278.3, 1163… #> 8 204376_v20… 90% gh; 10% rbbsg 90% gh; 10… habita… (((116110.1 210545.5, 1161… #> 9 205188_v20… 60% rbbsp; 40% gh 60% rbbsp;… habita… (((232114.7 161594.5, 2321… #> 10 205291_v20… 70% gh; 30% rbbsp 70% gh; 30… habita… (((191253.5 160641.5, 1912… #> # … with 68,290 more rows #> #> $habitatmap_terr_types #> # A tibble: 85,051 x 6 #> polygon_id type certain code_orig phab source #> #> 1 000038_v2016 91E0_va TRUE 91E0_va 100 habitatmap_stdized #> 2 000043_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 3 000132_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 4 000204_v2016 91E0_vn TRUE 91E0_vn 100 habitatmap_stdized #> 5 000255_v2016 91E0_vc TRUE 91E0_vc 100 habitatmap_stdized #> 6 000297_v2016 rbbsp TRUE rbbsp 10 habitatmap_stdized #> 7 000311_v2016 9130_end TRUE 9130_end 70 habitatmap_stdized #> 8 000311_v2016 rbbsp TRUE rbbsp 30 habitatmap_stdized #> 9 000390_v2016 91E0_vn TRUE 91E0_vn 70 habitatmap_stdized #> 10 000390_v2016 91E0_va TRUE 91E0_va 30 habitatmap_stdized #> # … with 85,041 more rows read_habitatmap_terr(filepaths_2018[3], version = "habitatmap_terr_2018_v2", keep_aq_types = FALSE, drop_7220 = FALSE) #> $habitatmap_terr_polygons #> Simple feature collection with 68300 features and 4 fields #> Geometry type: MULTIPOLYGON #> Dimension: XY #> Bounding box: xmin: 22003.2 ymin: 153084.4 xmax: 258871.8 ymax: 243351.8 #> Projected CRS: Belge 1972 / Belgian Lambert 72 #> # A tibble: 68,300 x 5 #> polygon_id description_orig description source geom #> * #> 1 129420_v20… 60% x; 40% 6430_… 60% x; 40%… habita… (((242838.5 161337.3, 2428… #> 2 130153_v20… 70% 9120_qb; 30%… 70% 9120_q… habita… (((150669.4 227248.6, 1506… #> 3 130815_v20… 70% gh; 30% 9160 70% gh; 30… habita… (((258338.4 158696.1, 2583… #> 4 137826_v20… 100% 6430,rbbhf 100% 6430_… habita… (((181587.2 234938, 181613… #> 5 170624_v20… 100% rbbmr 100% rbbmr habita… (((145876.8 229686.8, 1457… #> 6 203261_v20… 70% gh; 30% rbbmr 70% gh; 30… habita… (((117137.2 210307.9, 1171… #> 7 204352_v20… 80% gh; 20% rbbsp 80% gh; 20… habita… (((116357.3 159278.3, 1163… #> 8 204376_v20… 90% gh; 10% rbbsg 90% gh; 10… habita… (((116110.1 210545.5, 1161… #> 9 205188_v20… 60% rbbsp; 40% gh 60% rbbsp;… habita… (((232114.7 161594.5, 2321… #> 10 205291_v20… 70% gh; 30% rbbsp 70% gh; 30… habita… (((191253.5 160641.5, 1912… #> # … with 68,290 more rows #> #> $habitatmap_terr_types #> # A tibble: 85,091 x 6 #> polygon_id type certain code_orig phab source #> #> 1 000038_v2016 91E0_va TRUE 91E0_va 100 habitatmap_stdized #> 2 000043_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 3 000132_v2016 9130_end TRUE 9130_end 100 habitatmap_stdized #> 4 000204_v2016 91E0_vn TRUE 91E0_vn 100 habitatmap_stdized #> 5 000255_v2016 91E0_vc TRUE 91E0_vc 100 habitatmap_stdized #> 6 000297_v2016 rbbsp TRUE rbbsp 10 habitatmap_stdized #> 7 000311_v2016 9130_end TRUE 9130_end 70 habitatmap_stdized #> 8 000311_v2016 rbbsp TRUE rbbsp 30 habitatmap_stdized #> 9 000390_v2016 91E0_vn TRUE 91E0_vn 70 habitatmap_stdized #> 10 000390_v2016 91E0_va TRUE 91E0_va 30 habitatmap_stdized #> # … with 85,081 more rows ``` Created on 2021-05-11 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)
Session info ``` r sessioninfo::session_info() #> ─ Session info ─────────────────────────────────────────────────────────────── #> setting value #> version R version 4.0.5 (2021-03-31) #> os Linux Mint 20 #> system x86_64, linux-gnu #> ui X11 #> language nl_BE:nl #> collate nl_BE.UTF-8 #> ctype nl_BE.UTF-8 #> tz Europe/Brussels #> date 2021-05-11 #> #> ─ Packages ─────────────────────────────────────────────────────────────────── #> package * version date lib source #> assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.2) #> class 7.3-19 2021-05-03 [4] CRAN (R 4.0.5) #> classInt 0.4-3 2020-04-07 [1] CRAN (R 4.0.2) #> cli 2.4.0 2021-04-05 [1] CRAN (R 4.0.5) #> crayon 1.4.1 2021-02-08 [1] CRAN (R 4.0.3) #> DBI 1.1.1 2021-01-15 [1] CRAN (R 4.0.3) #> digest 0.6.27 2020-10-24 [1] CRAN (R 4.0.3) #> dplyr 1.0.5 2021-03-05 [1] CRAN (R 4.0.5) #> e1071 1.7-6 2021-03-18 [1] CRAN (R 4.0.5) #> ellipsis 0.3.1 2020-05-15 [1] CRAN (R 4.0.2) #> evaluate 0.14 2019-05-28 [1] CRAN (R 4.0.2) #> fansi 0.4.2 2021-01-15 [1] CRAN (R 4.0.3) #> forcats 0.5.1 2021-01-27 [1] CRAN (R 4.0.3) #> fs 1.5.0 2020-07-31 [1] CRAN (R 4.0.2) #> generics 0.1.0 2020-10-31 [1] CRAN (R 4.0.3) #> git2r 0.28.0 2021-01-10 [1] CRAN (R 4.0.3) #> git2rdata 0.3.1 2021-01-21 [1] CRAN (R 4.0.3) #> glue 1.4.2 2020-08-27 [1] CRAN (R 4.0.2) #> highr 0.8 2019-03-20 [1] CRAN (R 4.0.2) #> htmltools 0.5.1.1 2021-01-22 [1] CRAN (R 4.0.3) #> KernSmooth 2.23-18 2020-10-29 [4] CRAN (R 4.0.3) #> knitr 1.31 2021-01-27 [1] CRAN (R 4.0.3) #> lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.4) #> magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.0.3) #> n2khab * 0.4.0.9000 2021-05-11 [1] local #> pillar 1.5.1 2021-03-05 [1] CRAN (R 4.0.5) #> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.0.2) #> plyr 1.8.6 2020-03-03 [1] CRAN (R 4.0.2) #> proxy 0.4-25 2021-03-05 [1] CRAN (R 4.0.4) #> purrr 0.3.4 2020-04-17 [1] CRAN (R 4.0.2) #> R6 2.5.0 2020-10-28 [1] CRAN (R 4.0.3) #> Rcpp 1.0.6 2021-01-15 [1] CRAN (R 4.0.3) #> reprex 2.0.0 2021-04-02 [1] CRAN (R 4.0.5) #> rlang 0.4.10 2020-12-30 [1] CRAN (R 4.0.3) #> rmarkdown 2.7 2021-02-19 [1] CRAN (R 4.0.4) #> rprojroot 2.0.2 2020-11-15 [1] CRAN (R 4.0.3) #> rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.0.3) #> sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.2) #> sf 0.9-8 2021-03-17 [1] CRAN (R 4.0.5) #> stringi 1.5.3 2020-09-09 [1] CRAN (R 4.0.2) #> stringr 1.4.0 2019-02-10 [1] CRAN (R 4.0.2) #> tibble 3.1.0 2021-02-25 [1] CRAN (R 4.0.5) #> tidyr 1.1.3 2021-03-03 [1] CRAN (R 4.0.5) #> tidyselect 1.1.0 2020-05-11 [1] CRAN (R 4.0.2) #> units 0.7-1 2021-03-16 [1] CRAN (R 4.0.5) #> utf8 1.2.1 2021-03-12 [1] CRAN (R 4.0.5) #> vctrs 0.3.7 2021-03-29 [1] CRAN (R 4.0.5) #> withr 2.4.1 2021-01-26 [1] CRAN (R 4.0.3) #> xfun 0.22 2021-03-11 [1] CRAN (R 4.0.4) #> yaml 2.2.1 2020-02-01 [1] CRAN (R 4.0.2) #> #> [1] /home/floris/lib/R/library #> [2] /usr/local/lib/R/site-library #> [3] /usr/lib/R/site-library #> [4] /usr/lib/R/library ```
florisvdh commented 3 years ago

Thank you for reviewing @cecileherr :pray:.

florisvdh commented 3 years ago

@cecileherr for me this PR is finished, you can merge

cecileherr commented 3 years ago

@cecileherr for me this PR is finished, you can merge

Many thanks ! Let's go!