search

inbo / riparias-prep

Preparatory scripts and data management for the RIPARIAS workflow
MIT License
0 stars 1 forks source link

27 update riparias baseline #28

Closed SanderDevisscher closed 3 years ago

SanderDevisscher commented 3 years ago

Fixes #27 Fixes #29

https://iasspeciesdashboard.shinyapps.io/Riparias-baseline-maps/?_ga=2.2735920.1699838300.1623651778-1489601090.1593499425 werd upgedatet

daarnaast werd een nieuwe interactieve kaart gemaakt voor de perimeter van de zwalmvallei die liesbeth heeft doorgestuurd. zie https://iasspeciesdashboard.shinyapps.io/exoten-in-zwalmvallei/

SanderDevisscher commented 3 years ago

@timadriaens ik ga morgen een nieuwe update doen van de baseline/zwalm vallei daarna zet ik de PR terug open voor review.

SanderDevisscher commented 3 years ago

@timadriaens zowel de baseline als de zwalm kaartjes werden upgedatet.

Keur je deze PR en de spiegel PR in de EASIN repo goed als alles in orde is?

SanderDevisscher commented 3 years ago

The two new crayfish are lacking from the legend (marbled crayfish and Procambarus zonangulus/acutus)

I probably found the cause for these species lacking from the Riparias shinyapp. I do a filter based on a nameserver which was lacking these species.

Adding, Procambarus virginalis, which is named marbled crayfish in english to the nameserver does create a conflict with Procambarus fallax which is also named marbled crayfish in english. Alternatively Procambarus fallax is also named Slough Crayfish or Deceitful Crayfish. I suggest using 1 of these names for the shinyapp.

@timadriaens which of the alternative names should I use ?

timadriaens commented 3 years ago

@SanderDevisscher Procambarus fallax is no longer the same as Procambarus virginalis. The species listed on the Union List in 2016 was originally Procambarus fallax f. virginalis (the parthenogenetic form of P. fallax), but so the taxonomy has changed and the marbled crayfish is now calle Procambarus virginalis. Slough crayfish is P. fallax (sensu novo) so that name is incorrect and confusing. Can we alter the name for fallax on the nameserver so that the shiny displays "marbled crayfish"?

SanderDevisscher commented 3 years ago

@timadriaens currently both Procambarus fallax & Procambarus virginalis are named marbled crayfish.

see https://docs.google.com/spreadsheets/d/15f17hXE9ZyUxEe2xA0seKs0CSibgYJdkaWcnmVoI1yY/edit#gid=0