Pull codon tables per organism and allow fully custom codons

inc0 / codone

Codon optimization tool

MIT License

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Pull codon tables per organism and allow fully custom codons #1

Open inc0 opened 1 year ago

inc0 commented 1 year ago

Right now codon mapping (to amino actids) are hardcoded here. There may be variations between organisms. We should find a way to pull correct mappings for each organism specified.

inc0 commented 1 year ago

We could dynamically generate such mapping using genbank files https://www.ncbi.nlm.nih.gov/nuccore/AP026945.1?report=genbank - map AA sequence to DNA sequence and extract codons