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DMC_v3_tasks
Issues for DMC v3 project board
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Adjust ElasticSearch indices to include fields from new data model
#39
jthib077
opened
1 year ago
0
Test blocked by
#37
thomasyu888
closed
1 year ago
0
Test depends
#36
thomasyu888
closed
1 year ago
0
Test dependent issue
#35
thomasyu888
closed
1 year ago
2
Completion of accumulated issues in LinkML repo
#34
lopierra
opened
1 year ago
0
Automate data model deployment flow
#33
lopierra
opened
1 year ago
0
LinkML model to support both the DCA and raw usage in CAVATICA
#32
lopierra
opened
1 year ago
0
Automate scheduling and monitoring of workflow execution on CAVATICA
#31
ByroneCole-SageBionetworks
closed
1 year ago
2
CHOP - process the new data types for the May release to meet the requirement for processed genomic data
#30
ByroneCole-SageBionetworks
opened
1 year ago
0
Automate scheduling, triggering and monitoring of workflows on CAVATICA
#29
ByroneCole-SageBionetworks
opened
1 year ago
5
Determine data types to be processed
#28
ByroneCole-SageBionetworks
opened
1 year ago
15
Ability to take in RAS passports, do AuthZ checking and generated signed URLs via DRS for controlled access data distribution
#27
ByroneCole-SageBionetworks
opened
1 year ago
1
Updated data from existing cohorts:
#26
ByroneCole-SageBionetworks
opened
1 year ago
1
NEW data:
#25
ByroneCole-SageBionetworks
opened
1 year ago
1
Load new harmonized/curated data from released Synapse table into INCLUDE Production FHIR service
#24
ByroneCole-SageBionetworks
opened
1 year ago
1
REST API?
#23
ByroneCole-SageBionetworks
opened
1 year ago
1
Implement Germline Variant Exploration tool that will enable users to navigate across millions of annotated germline variants from INCLUDE participants with known co-occurring conditions
#22
ByroneCole-SageBionetworks
opened
1 year ago
0
Implement Participant, study, file, variant entity page to provide additional entity-specific information
#21
ByroneCole-SageBionetworks
opened
1 year ago
1
ETL the new datasets from the INCLUDE FHIR server
#20
ByroneCole-SageBionetworks
opened
1 year ago
1
Ability to programmatically connect to FHIR endpoints using OAuth backed by keycloak for authorized registered tier users
#19
ByroneCole-SageBionetworks
opened
1 year ago
1
NIST requirements for Sage
#18
ByroneCole-SageBionetworks
opened
1 year ago
0
NIST controls for CHOP
#17
ByroneCole-SageBionetworks
opened
1 year ago
1
Clearinghouse for SBG
#16
ByroneCole-SageBionetworks
opened
1 year ago
2
IDs used by the FHIR resources
#15
ByroneCole-SageBionetworks
opened
1 year ago
1
Identify participants across multiple cohorts
#14
ByroneCole-SageBionetworks
opened
1 year ago
1
Biospecimens/subjects, data files, samples, all need linking system
#13
ByroneCole-SageBionetworks
opened
1 year ago
1
Mapping Synapse IDs to portal “labels”
#11
ByroneCole-SageBionetworks
opened
1 year ago
1
Tracking intermediate stages in data flow
#10
ByroneCole-SageBionetworks
opened
1 year ago
0
dbGaP review and completion confirmation
#9
kjflynn
opened
1 year ago
2
Registration with dBGap where needed - submission of subject consent and subject-sample mapping
#7
kjflynn
opened
1 year ago
1
Data release SOP is established and followed
#6
ByroneCole-SageBionetworks
opened
1 year ago
0
Generation of dbGaP metadata containing subject consent and subject-sample mapping using dbGaP template
#5
kjflynn
opened
1 year ago
1
Data submission SOP is established and followed
#4
ByroneCole-SageBionetworks
opened
1 year ago
1
Data processing SOP for cleaning, annotating, and transforming clinical data is established and followed
#3
ByroneCole-SageBionetworks
opened
1 year ago
1