include-dcc / include-linkml

LinkML Schema for INCLUDE DCC
https://include-dcc.github.io/include-linkml/
MIT License
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Provide short description of HPO and MONDO for portal #158

Open lopierra opened 9 months ago

lopierra commented 9 months ago

The summary visualizations in the portal reference HPO and MONDO, but users might not know what those are. We need a short description of what HPO/MONDO are, how to use them (can link out to more detailed info), and/or how to interpret the interactive visualization. This blurb was initially suggested to be a tooltip, but we can work with the portal team to figure out the best format.

Screenshot below - See the Summary tab of the Data Exploration page in the portal for interactivity.

image
twhetzel commented 9 months ago

Here is a proposal: The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotypic abnormalities encountered in human disease.

MONDO is a disease ontology which provides a unified view of diseases across various life science and clinical disease terminologies.

@monicacecilia any updates you would suggest?

lopierra commented 8 months ago

@jthib077 do you have any info about how to use the HPO/MONDO visualizations in the Data Hub? I'm trying to write a short description (based on a request from a recent user interview) but I'm not sure how to describe what the colours represent.

The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotypic abnormalities encountered in human disease. MONDO is a disease ontology which provides a unified view of diseases across various life science and clinical disease terminologies. Data on co-occurring conditions is tagged with HPO and/or MONDO terms to provide a standardized vocabulary for searching across cohorts.

monicacecilia commented 8 months ago

From 2024-03-12 Data Modeling Call, also add:

We annotate the data we receive about participants using ontology terms to facilitate how users explore and unveil insights.

@lopierra 👀 👆🏽

jthib077 commented 8 months ago

Unfortunately, we don't have a description on hand. I think it may also be important to highlight the arborescence of the tool. Not sure if you all have something that touches on that?