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indexofire / ndafp

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https://github.com/indexofire/pathongs
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unknown error message #1

Open Diamonds95 opened 5 years ago

Diamonds95 commented 5 years ago

hello! I saw your ngs-data-for-pathogen-analysis webpage and have really studied a lot! But when I try to use REALPHY to calling SNP, I get back this error message. Can you help me ? Thanks a lot! 1~4{4_A7Y(NSP Z7 JOA4$0

indexofire commented 5 years ago

It's look like differ version of samtools or other type thing. I dont recommend REALPHY as a SNP calling pipeline with no long-term software stability. Sometimes if the tools is too old for the libs update too fast.

Take a shoot for "Snippy", I prefer it now for bacterial SNP calling.