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indigo-dc / onedata

Indigo mirror of http://github.com/onedata/onedata
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Error removing directories #24

Closed mtangaro closed 7 years ago

mtangaro commented 7 years ago

Dear Onedata experts, For the ELIXIR-ITALY use case we are using a onedata space to store Galaxy input and output data. To do that Galaxy creates a directory named “database” to store all of them. But I'm experiencing some difficulties to remove directories from my space, once created:

onedata space mountpoint: /data ondata space name: galaxy

(.venv) [galaxy@galaxy-test galaxy]$ ls ciao.txt _conda database job_work prova tool_deps (.venv) [galaxy@galaxy-test galaxy]$ rm -rf _conda rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/weakref.py’: Resource temporarily unavailable rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/wsgiref’: Resource temporarily unavailable rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/xml/dom/expatbuilder.py’: Resource temporarily unavailable rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/xml/dom/minicompat.py’: Resource temporarily unavailable rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/xml/sax/init.py’: Resource temporarily unavailable rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/xmlrpc/pycache/init.cpython-35.opt-2.pyc’: Resource temporarily unavailable rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/lib2to3/fixes/pycache/fix_ne.cpython-35.pyc’: Resource temporarily unavailable rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/lib2to3/fixes/pycache/fix_urllib.cpython-35.pyc’: Resource temporarily unavailable rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/lib2to3/fixes/pycache/fix_next.cpython-35.opt-1.pyc’: Resource temporarily unavailable rm: cannot remove ‘_conda/pkgs/python-3.5.2-0/lib/python3.5/lib2to3/fixes/pycache/fix_renames.cpython-35.pyc’: Resource temporarily unavailable …

trying to remove it on the web interface give me: "_conda" could not be removed: Internal Sever Error

These directories has been created automatically by galaxy. While if I manually create directories I can remove them. I don’t know if this is related only to the oneprovider that I’m using (indigo-wp3-onep.recas.ba.infn.it), we are investigating this issue. Thanks a lot Marco.

luman75 commented 7 years ago

@mtangaro on which version of oneclient are you working?