[joss-review] tests

[vsoch]

It looks like tests aren't included in the release, and at least for HPC, installers would want to be able to run tests before moving forward. Have you considered adding them?

[mviereck]

In fact this is a requirement for the JOSS review to have automated or manual test instructions: https://github.com/openjournals/joss-reviews/issues/3295

Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?

[mariojmdavid]

this regards the devel3 branch we will tackle this in the documentation since unit tests exist (we will make sure they are part of the release, and coverage of 79% at the moment, our Jenkins CI pipeline executes them additionally there are 2 shell scripts 1 utils/udocker_test.sh
2 utils/udocker_test-run.sh

where almost all the commands of udocker are tested from the perspective of a user, the second script test udocker run with several images and all execution modes except singularity (S1)

[jorge-lip]

The have unit tests, integration tests, security tests with bandit and code style checking. We use Jenkins pipelines for our SQA. They are under utils as Mario explained. The .sqa directory has the configurations for the Jenkins pipeline as code. We tests the udocker functionalities we don't provide tests for specific applications or environments such as HPC.

[vsoch]

@jorge-lip great! Are there instructions anywhere for how a developer or interested user like myself could run the tests?

[mariojmdavid]

just did a commit with information about how to run tests, it's in section 9 of the installation manual https://github.com/indigo-dc/udocker/blob/master/docs/installation_manual.md

[vsoch]

This is great! I had a few suggestions here -> https://github.com/indigo-dc/udocker/pull/333

[mariojmdavid]

PR approved and merged

[vsoch]

I'm good with thew new additions - @mviereck when you've had a chance to take a look let me know, and if you are also good we can close the issue.

[mviereck]

I've tried to run the test as described:

virtualenv -p python3 ud3
source ud3/bin/activate
git clone https://github.com/indigo-dc/udocker.git
cd udocker
pip install -r requirements-dev.txt

I got a lot of errors at the pip install step:

``` $ pip install -r requirements-dev.txt Collecting pycurl>=7.15.5 Downloading pycurl-7.43.0.6.tar.gz (222 kB) |████████████████████████████████| 222 kB 148 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_d24e0afcc1234c6e8f3614cb1e6cf277/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_d24e0afcc1234c6e8f3614cb1e6cf277/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-vfl_elow cwd: /tmp/pip-install-gdqmopho/pycurl_d24e0afcc1234c6e8f3614cb1e6cf277/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_d24e0afcc1234c6e8f3614cb1e6cf277/setup.py", line 236, in configure_unix p = subprocess.Popen((self.curl_config(), '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_d24e0afcc1234c6e8f3614cb1e6cf277/setup.py", line 988, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_d24e0afcc1234c6e8f3614cb1e6cf277/setup.py", line 649, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_d24e0afcc1234c6e8f3614cb1e6cf277/setup.py", line 101, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_d24e0afcc1234c6e8f3614cb1e6cf277/setup.py", line 241, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/50/1a/35b1d8b8e4e23a234f1b17a8a40299fd550940b16866c9a1f2d47a04b969/pycurl-7.43.0.6.tar.gz#sha256=8301518689daefa53726b59ded6b48f33751c383cf987b0ccfbbc4ed40281325 (from https://pypi.org/simple/pycurl/) (requires-python:>=3.5). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.43.0.5.tar.gz (216 kB) |████████████████████████████████| 216 kB 148 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_d2021d887aba41e986309ba1a9ad6f24/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_d2021d887aba41e986309ba1a9ad6f24/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-0ec9to67 cwd: /tmp/pip-install-gdqmopho/pycurl_d2021d887aba41e986309ba1a9ad6f24/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_d2021d887aba41e986309ba1a9ad6f24/setup.py", line 233, in configure_unix p = subprocess.Popen((self.curl_config(), '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_d2021d887aba41e986309ba1a9ad6f24/setup.py", line 961, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_d2021d887aba41e986309ba1a9ad6f24/setup.py", line 623, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_d2021d887aba41e986309ba1a9ad6f24/setup.py", line 101, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_d2021d887aba41e986309ba1a9ad6f24/setup.py", line 238, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/ef/05/4b773f74f830a90a326b06f9b24e65506302ab049e825a3c0b60b1a6e26a/pycurl-7.43.0.5.tar.gz#sha256=ec7dd291545842295b7b56c12c90ffad2976cc7070c98d7b1517b7b6cd5994b3 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.43.0.4.tar.gz (215 kB) |████████████████████████████████| 215 kB 149 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_a12a478de2c44e8ab5f563f3909d72a7/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_a12a478de2c44e8ab5f563f3909d72a7/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-1tip3p9e cwd: /tmp/pip-install-gdqmopho/pycurl_a12a478de2c44e8ab5f563f3909d72a7/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_a12a478de2c44e8ab5f563f3909d72a7/setup.py", line 233, in configure_unix p = subprocess.Popen((self.curl_config(), '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_a12a478de2c44e8ab5f563f3909d72a7/setup.py", line 957, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_a12a478de2c44e8ab5f563f3909d72a7/setup.py", line 618, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_a12a478de2c44e8ab5f563f3909d72a7/setup.py", line 101, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_a12a478de2c44e8ab5f563f3909d72a7/setup.py", line 238, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/0f/52/2c6951c4cd8a4e9288f2561eb9da1dc15b5d0f4e610a7e2acf39bc703281/pycurl-7.43.0.4.tar.gz#sha256=bdc308ff2a16ede41921cb0d88f51bd6cb5208c6478be9db579789e2e4db2528 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.43.0.3.tar.gz (215 kB) |████████████████████████████████| 215 kB 94 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_8342159dbc4c403b994ef0fac168da55/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_8342159dbc4c403b994ef0fac168da55/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-71g04xf5 cwd: /tmp/pip-install-gdqmopho/pycurl_8342159dbc4c403b994ef0fac168da55/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_8342159dbc4c403b994ef0fac168da55/setup.py", line 228, in configure_unix p = subprocess.Popen((self.curl_config(), '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_8342159dbc4c403b994ef0fac168da55/setup.py", line 944, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_8342159dbc4c403b994ef0fac168da55/setup.py", line 606, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_8342159dbc4c403b994ef0fac168da55/setup.py", line 101, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_8342159dbc4c403b994ef0fac168da55/setup.py", line 233, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/ac/b3/0f3979633b7890bab6098d84c84467030b807a1e2b31f5d30103af5a71ca/pycurl-7.43.0.3.tar.gz#sha256=6f08330c5cf79fa8ef68b9912b9901db7ffd34b63e225dce74db56bb21deda8e (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.43.0.2.tar.gz (214 kB) |████████████████████████████████| 214 kB 28 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_b156f0da2f0245b9aa9392ea7a2d185d/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_b156f0da2f0245b9aa9392ea7a2d185d/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-s6cb76p9 cwd: /tmp/pip-install-gdqmopho/pycurl_b156f0da2f0245b9aa9392ea7a2d185d/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_b156f0da2f0245b9aa9392ea7a2d185d/setup.py", line 222, in configure_unix p = subprocess.Popen((self.curl_config(), '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_b156f0da2f0245b9aa9392ea7a2d185d/setup.py", line 913, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_b156f0da2f0245b9aa9392ea7a2d185d/setup.py", line 582, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_b156f0da2f0245b9aa9392ea7a2d185d/setup.py", line 99, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_b156f0da2f0245b9aa9392ea7a2d185d/setup.py", line 227, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/e8/e4/0dbb8735407189f00b33d84122b9be52c790c7c3b25286826f4e1bdb7bde/pycurl-7.43.0.2.tar.gz#sha256=0f0cdfc7a92d4f2a5c44226162434e34f7d6967d3af416a6f1448649c09a25a4 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.43.0.1.tar.gz (195 kB) |████████████████████████████████| 195 kB 147 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_29c1f91bb14a46efa5eec5ca6bae66bc/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_29c1f91bb14a46efa5eec5ca6bae66bc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-abw4yag8 cwd: /tmp/pip-install-gdqmopho/pycurl_29c1f91bb14a46efa5eec5ca6bae66bc/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_29c1f91bb14a46efa5eec5ca6bae66bc/setup.py", line 103, in configure_unix p = subprocess.Popen((CURL_CONFIG, '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_29c1f91bb14a46efa5eec5ca6bae66bc/setup.py", line 841, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_29c1f91bb14a46efa5eec5ca6bae66bc/setup.py", line 508, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_29c1f91bb14a46efa5eec5ca6bae66bc/setup.py", line 72, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_29c1f91bb14a46efa5eec5ca6bae66bc/setup.py", line 108, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/77/d9/d272b38e6e25d2686e22f6058820298dadead69340b1c57ff84c87ef81f0/pycurl-7.43.0.1.tar.gz#sha256=43231bf2bafde923a6d9bb79e2407342a5f3382c1ef0a3b2e491c6a4e50b91aa (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.43.0.tar.gz (182 kB) |████████████████████████████████| 182 kB 30 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_7c5eb365935a4289b0f3447890044304/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_7c5eb365935a4289b0f3447890044304/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-k1hx2drw cwd: /tmp/pip-install-gdqmopho/pycurl_7c5eb365935a4289b0f3447890044304/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_7c5eb365935a4289b0f3447890044304/setup.py", line 102, in configure_unix p = subprocess.Popen((CURL_CONFIG, '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_7c5eb365935a4289b0f3447890044304/setup.py", line 823, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_7c5eb365935a4289b0f3447890044304/setup.py", line 497, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_7c5eb365935a4289b0f3447890044304/setup.py", line 71, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_7c5eb365935a4289b0f3447890044304/setup.py", line 107, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/12/3f/557356b60d8e59a1cce62ffc07ecc03e4f8a202c86adae34d895826281fb/pycurl-7.43.0.tar.gz#sha256=aa975c19b79b6aa6c0518c0cc2ae33528900478f0b500531dbcdbf05beec584c (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.21.5.tar.gz (170 kB) |████████████████████████████████| 170 kB 148 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_d61383c0f9d4453c91753274b6705e52/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_d61383c0f9d4453c91753274b6705e52/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-nhmgk35k cwd: /tmp/pip-install-gdqmopho/pycurl_d61383c0f9d4453c91753274b6705e52/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_d61383c0f9d4453c91753274b6705e52/setup.py", line 102, in configure_unix p = subprocess.Popen((CURL_CONFIG, '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_d61383c0f9d4453c91753274b6705e52/setup.py", line 743, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_d61383c0f9d4453c91753274b6705e52/setup.py", line 497, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_d61383c0f9d4453c91753274b6705e52/setup.py", line 71, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_d61383c0f9d4453c91753274b6705e52/setup.py", line 107, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/74/fa/37bc18e2f60100d9833cf008dca0861f6815cd1743c3b31a419bc6576ee3/pycurl-7.21.5.tar.gz#sha256=8a1e0eb55573388275a1d6c2534ca4cfca5d7fa772b99b505c08fa149b27aed0 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.5.3.tar.gz (154 kB) |████████████████████████████████| 154 kB 28 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_e8ddb10fbcf14407923a3056284f5a03/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_e8ddb10fbcf14407923a3056284f5a03/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-jaey4ki0 cwd: /tmp/pip-install-gdqmopho/pycurl_e8ddb10fbcf14407923a3056284f5a03/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_e8ddb10fbcf14407923a3056284f5a03/setup.py", line 102, in configure_unix p = subprocess.Popen((CURL_CONFIG, '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_e8ddb10fbcf14407923a3056284f5a03/setup.py", line 731, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_e8ddb10fbcf14407923a3056284f5a03/setup.py", line 488, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_e8ddb10fbcf14407923a3056284f5a03/setup.py", line 71, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_e8ddb10fbcf14407923a3056284f5a03/setup.py", line 107, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/b4/a2/59761b58683967087aa131e1043b67d6b4675f0d0e68940c3b4d6f9df263/pycurl-7.19.5.3.tar.gz#sha256=24f6c4016b1dd2a5e29d1b025ac2ad61f80c17adfdcf8a7f47aefab63ace78d7 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.5.2.tar.gz (153 kB) |████████████████████████████████| 153 kB 148 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_bdac16c5cd7b437ca42494f1c9efd2bf/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_bdac16c5cd7b437ca42494f1c9efd2bf/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-a5cufd6i cwd: /tmp/pip-install-gdqmopho/pycurl_bdac16c5cd7b437ca42494f1c9efd2bf/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_bdac16c5cd7b437ca42494f1c9efd2bf/setup.py", line 102, in configure_unix p = subprocess.Popen((CURL_CONFIG, '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_bdac16c5cd7b437ca42494f1c9efd2bf/setup.py", line 731, in ext = get_extension(sys.argv, split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_bdac16c5cd7b437ca42494f1c9efd2bf/setup.py", line 488, in get_extension ext_config = ExtensionConfiguration(argv) File "/tmp/pip-install-gdqmopho/pycurl_bdac16c5cd7b437ca42494f1c9efd2bf/setup.py", line 71, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_bdac16c5cd7b437ca42494f1c9efd2bf/setup.py", line 107, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/94/35/04e331a7a9e2fdea4b9cadcc23038bd56f80632065258c98730a199fd223/pycurl-7.19.5.2.tar.gz#sha256=98cc821555d152977fac99b6e5cb0f759275aabdf14e4928890c6fcc944ab736 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.5.1.tar.gz (142 kB) |████████████████████████████████| 142 kB 38 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_8854ca41112b42beaa42b1c0c1113015/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_8854ca41112b42beaa42b1c0c1113015/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-bzrxbre_ cwd: /tmp/pip-install-gdqmopho/pycurl_8854ca41112b42beaa42b1c0c1113015/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_8854ca41112b42beaa42b1c0c1113015/setup.py", line 95, in configure_unix p = subprocess.Popen((CURL_CONFIG, '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_8854ca41112b42beaa42b1c0c1113015/setup.py", line 634, in ext = get_extension(split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_8854ca41112b42beaa42b1c0c1113015/setup.py", line 392, in get_extension ext_config = ExtensionConfiguration() File "/tmp/pip-install-gdqmopho/pycurl_8854ca41112b42beaa42b1c0c1113015/setup.py", line 65, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_8854ca41112b42beaa42b1c0c1113015/setup.py", line 100, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/f9/fb/973d075babcd8cb101d964b898c7b148bb80275344d960c27532b5b35abf/pycurl-7.19.5.1.tar.gz#sha256=6e9770f80459757f73bd71af82fbb29cd398b38388cdf1beab31ea91a331bc6c (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.5.tar.gz (107 kB) |████████████████████████████████| 107 kB 119 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_dc21198d314d4ae78206a94f8b00e626/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_dc21198d314d4ae78206a94f8b00e626/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-fd48rsma cwd: /tmp/pip-install-gdqmopho/pycurl_dc21198d314d4ae78206a94f8b00e626/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_dc21198d314d4ae78206a94f8b00e626/setup.py", line 95, in configure_unix p = subprocess.Popen((CURL_CONFIG, '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_dc21198d314d4ae78206a94f8b00e626/setup.py", line 634, in ext = get_extension(split_extension_source=split_extension_source) File "/tmp/pip-install-gdqmopho/pycurl_dc21198d314d4ae78206a94f8b00e626/setup.py", line 392, in get_extension ext_config = ExtensionConfiguration() File "/tmp/pip-install-gdqmopho/pycurl_dc21198d314d4ae78206a94f8b00e626/setup.py", line 65, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_dc21198d314d4ae78206a94f8b00e626/setup.py", line 100, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/6c/48/13bad289ef6f4869b1d8fc11ae54de8cfb3cc4a2eb9f7419c506f763be46/pycurl-7.19.5.tar.gz#sha256=69a0aa7c9dddbfe4cebf4d1f674c490faccf739fc930d85d8990ce2fd0551a43 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.3.1.tar.gz (116 kB) |████████████████████████████████| 116 kB 148 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_98df6f37941044348bc448638e4caaf9/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_98df6f37941044348bc448638e4caaf9/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-l0x23bc8 cwd: /tmp/pip-install-gdqmopho/pycurl_98df6f37941044348bc448638e4caaf9/ Complete output (22 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_98df6f37941044348bc448638e4caaf9/setup.py", line 95, in configure_unix p = subprocess.Popen((CURL_CONFIG, '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_98df6f37941044348bc448638e4caaf9/setup.py", line 563, in ext = get_extension() File "/tmp/pip-install-gdqmopho/pycurl_98df6f37941044348bc448638e4caaf9/setup.py", line 368, in get_extension ext_config = ExtensionConfiguration() File "/tmp/pip-install-gdqmopho/pycurl_98df6f37941044348bc448638e4caaf9/setup.py", line 65, in __init__ self.configure() File "/tmp/pip-install-gdqmopho/pycurl_98df6f37941044348bc448638e4caaf9/setup.py", line 100, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/22/e9/f3dc93a056957d80b5697f221dbb6a7c114f979bdfa7433bc8e89d723b0f/pycurl-7.19.3.1.tar.gz#sha256=c0d673fe99a9de07239eabe77c798f1b043f60c02afaec1430ceaf59d7501a4f (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.3.tar.gz (113 kB) |████████████████████████████████| 113 kB 150 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_d00726c5567c40aca6af141f6526d550/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_d00726c5567c40aca6af141f6526d550/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-l6qbrnj6 cwd: /tmp/pip-install-gdqmopho/pycurl_d00726c5567c40aca6af141f6526d550/ Complete output (20 lines): Traceback (most recent call last): File "/tmp/pip-install-gdqmopho/pycurl_d00726c5567c40aca6af141f6526d550/setup.py", line 175, in configure_unix p = subprocess.Popen((CURL_CONFIG, '--version'), File "/usr/lib/python3.9/subprocess.py", line 951, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.9/subprocess.py", line 1823, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'curl-config' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_d00726c5567c40aca6af141f6526d550/setup.py", line 479, in configure() File "/tmp/pip-install-gdqmopho/pycurl_d00726c5567c40aca6af141f6526d550/setup.py", line 297, in configure configure_unix() File "/tmp/pip-install-gdqmopho/pycurl_d00726c5567c40aca6af141f6526d550/setup.py", line 180, in configure_unix raise ConfigurationError(msg) __main__.ConfigurationError: Could not run curl-config: [Errno 2] No such file or directory: 'curl-config' ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/97/07/f96744c4d54b30f923194423c93215f71b62fd45d4626af7380ee5aac77c/pycurl-7.19.3.tar.gz#sha256=05e48835fe445ff327dcd373f49d9970e0b828a07cd4d08a23264507a742d616 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.0.3.tar.gz (90 kB) |█████████████████████▋ | 61 kB 155 kB/s eta 0:00:01 |████████████████████████████████| 90 kB 32 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_494d1707aec24ee0abaef958c973b4d1/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_494d1707aec24ee0abaef958c973b4d1/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-j11xpmq3 cwd: /tmp/pip-install-gdqmopho/pycurl_494d1707aec24ee0abaef958c973b4d1/ Complete output (6 lines): /bin/sh: 1: curl-config: not found Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_494d1707aec24ee0abaef958c973b4d1/setup.py", line 133, in raise Exception("`%s' not found -- please install the libcurl development files or specify --curl-config=/path/to/curl-config" % CURL_CONFIG) Exception: `curl-config' not found -- please install the libcurl development files or specify --curl-config=/path/to/curl-config ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/f7/42/1394c2aac756d8c75af612ee4476130e994d56b3fe097f213a1f5db5d272/pycurl-7.19.0.3.tar.gz#sha256=3293c990e076428bc7408c26c787af92fd531ef63976b1dc45f75eec7480b09a (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.0.2.tar.gz (89 kB) |████████████████████████████████| 89 kB 150 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_97bd07461e9b4562873dd9ced8c8d281/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_97bd07461e9b4562873dd9ced8c8d281/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-fqqfvev9 cwd: /tmp/pip-install-gdqmopho/pycurl_97bd07461e9b4562873dd9ced8c8d281/ Complete output (6 lines): /bin/sh: 1: curl-config: not found Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_97bd07461e9b4562873dd9ced8c8d281/setup.py", line 90, in raise Exception("`%s' not found -- please install the libcurl development files or specify --curl-config=/path/to/curl-config" % CURL_CONFIG) Exception: `curl-config' not found -- please install the libcurl development files or specify --curl-config=/path/to/curl-config ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/08/79/576eaecd19f11a265cd8d10f339ecfd4b1033436e56e6f2625153a4b79aa/pycurl-7.19.0.2.tar.gz#sha256=7a9e793b9181654d5eef3f6d22c244c57d2b51d38feb4c1b71d68efda99b0547 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.0.1.tar.gz (86 kB) |████████████████████████████████| 86 kB 162 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_ae121ddb66594bc39f3ddd323942fdc9/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_ae121ddb66594bc39f3ddd323942fdc9/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-6hjmctjj cwd: /tmp/pip-install-gdqmopho/pycurl_ae121ddb66594bc39f3ddd323942fdc9/ Complete output (6 lines): /bin/sh: 1: curl-config: not found Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_ae121ddb66594bc39f3ddd323942fdc9/setup.py", line 90, in raise Exception("`%s' not found -- please install the libcurl development files or specify --curl-config=/path/to/curl-config" % CURL_CONFIG) Exception: `curl-config' not found -- please install the libcurl development files or specify --curl-config=/path/to/curl-config ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/17/11/79e2187232ffdb96c9c200f8fc82452f8631f659fd9bdd2acf4bf7991905/pycurl-7.19.0.1.tar.gz#sha256=8b14d91d7453c5d9a4cc8cd4e61ab9389298813028d10661bf2079ee06d676c8 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.19.0.tar.gz (70 kB) |████████████████████████████████| 70 kB 54 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_eb06c4bb4e6249dc96c00727a6b10741/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_eb06c4bb4e6249dc96c00727a6b10741/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-h4od2h58 cwd: /tmp/pip-install-gdqmopho/pycurl_eb06c4bb4e6249dc96c00727a6b10741/ Complete output (6 lines): Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_eb06c4bb4e6249dc96c00727a6b10741/setup.py", line 58 print "FATAL: bad directory %s in environment variable %s" % (dir, envvar) ^ SyntaxError: invalid syntax ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/11/73/abcfbbb6e1dd7087fa53042c301c056c11264e8a737a4688f834162d731e/pycurl-7.19.0.tar.gz#sha256=8ef0bf1c0e48f0d193ef8ac4ae4b3596a1e91b6cbf1ff1b25de769fe3782aeb6 (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. Downloading pycurl-7.18.2.tar.gz (69 kB) |████████████████████████████████| 69 kB 155 kB/s ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-gdqmopho/pycurl_f246786bf1fe4812baa3bea160672d32/setup.py'"'"'; __file__='"'"'/tmp/pip-install-gdqmopho/pycurl_f246786bf1fe4812baa3bea160672d32/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-os5i7diw cwd: /tmp/pip-install-gdqmopho/pycurl_f246786bf1fe4812baa3bea160672d32/ Complete output (6 lines): Traceback (most recent call last): File "", line 1, in File "/tmp/pip-install-gdqmopho/pycurl_f246786bf1fe4812baa3bea160672d32/setup.py", line 58 print "FATAL: bad directory %s in environment variable %s" % (dir, envvar) ^ SyntaxError: invalid syntax ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/fe/8f/711d436c76938093dd10dae465ccee316c6241cfdada06c5cc3b5c1f74b8/pycurl-7.18.2.tar.gz#sha256=cda1085b7911ca802746d816f37d541165ad1e20c241d22e4c304ddb2bc81ffe (from https://pypi.org/simple/pycurl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. ERROR: Could not find a version that satisfies the requirement pycurl>=7.15.5 ERROR: No matching distribution found for pycurl>=7.15.5 ```

I could fix this installing libcurl4-gnutls-dev (debian) and several files are downloaded. But than I ran into the next error:

``` [...] Collecting lazy-object-proxy>=1.4.0 Downloading lazy_object_proxy-1.6.0-cp39-cp39-manylinux1_x86_64.whl (57 kB) |████████████████████████████████| 57 kB 181 kB/s Collecting wrapt<1.13,>=1.11 Downloading wrapt-1.12.1.tar.gz (27 kB) Building wheels for collected packages: pycurl, wrapt Building wheel for pycurl (setup.py) ... error ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4fdns7z8/pycurl_0bc854ef52c44900adffabdf651144b1/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4fdns7z8/pycurl_0bc854ef52c44900adffabdf651144b1/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-lq38c8yv cwd: /tmp/pip-install-4fdns7z8/pycurl_0bc854ef52c44900adffabdf651144b1/ Complete output (20 lines): Using curl-config (libcurl 7.74.0) Using SSL library: GnuTLS running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/curl copying python/curl/__init__.py -> build/lib.linux-x86_64-3.9/curl running build_ext building 'pycurl' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYCURL_VERSION="7.43.0.6" -DHAVE_CURL_SSL=1 -DHAVE_CURL_GNUTLS=1 -DHAVE_CURL_SSL=1 -I/home/lauscher/bin/udocker/ud3/include -I/usr/include/python3.9 -c src/docstrings.c -o build/temp.linux-x86_64-3.9/src/docstrings.o In file included from src/docstrings.c:4: src/pycurl.h:5:10: fatal error: Python.h: Datei oder Verzeichnis nicht gefunden 5 | #include | ^~~~~~~~~~ compilation terminated. error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1 ---------------------------------------- ERROR: Failed building wheel for pycurl Running setup.py clean for pycurl Building wheel for wrapt (setup.py) ... done Created wheel for wrapt: filename=wrapt-1.12.1-py3-none-any.whl size=19553 sha256=ddcca34ec6a4c573770fe44e5c31689702d9af97aa54826a19b7378a926448a3 Stored in directory: /home/lauscher/.cache/pip/wheels/98/23/68/efe259aaca055e93b08e74fbe512819c69a2155c11ba3c0f10 Successfully built wrapt Failed to build pycurl Installing collected packages: pycparser, pyparsing, cffi, zipp, webencodings, urllib3, smmap, six, packaging, jeepney, idna, filelock, distlib, cryptography, chardet, certifi, appdirs, wrapt, virtualenv, toml, SecretStorage, requests, Pygments, py, pluggy, pbr, lazy-object-proxy, importlib-metadata, gitdb, docutils, bleach, tqdm, tox, stevedore, snowballstemmer, rfc3986, requests-toolbelt, readme-renderer, PyYAML, pkginfo, nose, mccabe, keyring, isort, iniconfig, GitPython, coverage, colorama, attrs, astroid, watchdog, twine, tox-travis, pytest-runner, pytest, pylint, pydocstyle, pycurl, pep8, nosexcover, mock, bandit Running setup.py install for pycurl ... error ERROR: Command errored out with exit status 1: command: /home/lauscher/bin/udocker/ud3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4fdns7z8/pycurl_0bc854ef52c44900adffabdf651144b1/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4fdns7z8/pycurl_0bc854ef52c44900adffabdf651144b1/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-r81lwub2/install-record.txt --single-version-externally-managed --compile --install-headers /home/lauscher/bin/udocker/ud3/include/site/python3.9/pycurl cwd: /tmp/pip-install-4fdns7z8/pycurl_0bc854ef52c44900adffabdf651144b1/ Complete output (20 lines): Using curl-config (libcurl 7.74.0) Using SSL library: GnuTLS running install running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/curl copying python/curl/__init__.py -> build/lib.linux-x86_64-3.9/curl running build_ext building 'pycurl' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYCURL_VERSION="7.43.0.6" -DHAVE_CURL_SSL=1 -DHAVE_CURL_GNUTLS=1 -DHAVE_CURL_SSL=1 -I/home/lauscher/bin/udocker/ud3/include -I/usr/include/python3.9 -c src/docstrings.c -o build/temp.linux-x86_64-3.9/src/docstrings.o In file included from src/docstrings.c:4: src/pycurl.h:5:10: fatal error: Python.h: Datei oder Verzeichnis nicht gefunden 5 | #include | ^~~~~~~~~~ compilation terminated. error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1 ---------------------------------------- ERROR: Command errored out with exit status 1: /home/lauscher/bin/udocker/ud3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4fdns7z8/pycurl_0bc854ef52c44900adffabdf651144b1/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4fdns7z8/pycurl_0bc854ef52c44900adffabdf651144b1/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-r81lwub2/install-record.txt --single-version-externally-managed --compile --install-headers /home/lauscher/bin/udocker/ud3/include/site/python3.9/pycurl Check the logs for full command output. ```

[vsoch]

@mviereck I tried the tests and they did work - do you have python-dev headers available? (I'm seeing a reference to Python.h). Although that's a bit of a strange dependency, probably one of the libraries needs it to build.

[mviereck]

@vsoch I've installed pyton3-dev and get a new error, now about missing gnutls.h.

``` Building wheels for collected packages: pycurl Building wheel for pycurl (setup.py) ... error ERROR: Command errored out with exit status 1: command: /home/lauscher/git/ud3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-3_3lzrpt/pycurl_457dc6203ed44295b24f9ca3ec174c00/setup.py'"'"'; __file__='"'"'/tmp/pip-install-3_3lzrpt/pycurl_457dc6203ed44295b24f9ca3ec174c00/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ccubbr8w cwd: /tmp/pip-install-3_3lzrpt/pycurl_457dc6203ed44295b24f9ca3ec174c00/ Complete output (20 lines): Using curl-config (libcurl 7.74.0) Using SSL library: GnuTLS running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/curl copying python/curl/__init__.py -> build/lib.linux-x86_64-3.9/curl running build_ext building 'pycurl' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYCURL_VERSION="7.43.0.6" -DHAVE_CURL_SSL=1 -DHAVE_CURL_GNUTLS=1 -DHAVE_CURL_SSL=1 -I/home/lauscher/git/ud3/include -I/usr/include/python3.9 -c src/docstrings.c -o build/temp.linux-x86_64-3.9/src/docstrings.o In file included from src/docstrings.c:4: src/pycurl.h:202:13: fatal error: gnutls/gnutls.h: Datei oder Verzeichnis nicht gefunden 202 | # include | ^~~~~~~~~~~~~~~~~ compilation terminated. error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1 ---------------------------------------- ERROR: Failed building wheel for pycurl Running setup.py clean for pycurl Failed to build pycurl Installing collected packages: pycparser, pyparsing, cffi, zipp, webencodings, urllib3, smmap, six, packaging, jeepney, idna, filelock, distlib, cryptography, chardet, certifi, appdirs, wrapt, virtualenv, toml, SecretStorage, requests, Pygments, py, pluggy, pbr, lazy-object-proxy, importlib-metadata, gitdb, docutils, bleach, tqdm, tox, stevedore, snowballstemmer, rfc3986, requests-toolbelt, readme-renderer, PyYAML, pkginfo, nose, mccabe, keyring, isort, iniconfig, GitPython, coverage, colorama, attrs, astroid, watchdog, twine, tox-travis, pytest-runner, pytest, pylint, pydocstyle, pycurl, pep8, nosexcover, mock, bandit Running setup.py install for pycurl ... error ERROR: Command errored out with exit status 1: command: /home/lauscher/git/ud3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-3_3lzrpt/pycurl_457dc6203ed44295b24f9ca3ec174c00/setup.py'"'"'; __file__='"'"'/tmp/pip-install-3_3lzrpt/pycurl_457dc6203ed44295b24f9ca3ec174c00/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-8ive146d/install-record.txt --single-version-externally-managed --compile --install-headers /home/lauscher/git/ud3/include/site/python3.9/pycurl cwd: /tmp/pip-install-3_3lzrpt/pycurl_457dc6203ed44295b24f9ca3ec174c00/ Complete output (20 lines): Using curl-config (libcurl 7.74.0) Using SSL library: GnuTLS running install running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/curl copying python/curl/__init__.py -> build/lib.linux-x86_64-3.9/curl running build_ext building 'pycurl' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYCURL_VERSION="7.43.0.6" -DHAVE_CURL_SSL=1 -DHAVE_CURL_GNUTLS=1 -DHAVE_CURL_SSL=1 -I/home/lauscher/git/ud3/include -I/usr/include/python3.9 -c src/docstrings.c -o build/temp.linux-x86_64-3.9/src/docstrings.o In file included from src/docstrings.c:4: src/pycurl.h:202:13: fatal error: gnutls/gnutls.h: Datei oder Verzeichnis nicht gefunden 202 | # include | ^~~~~~~~~~~~~~~~~ compilation terminated. error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1 ---------------------------------------- ERROR: Command errored out with exit status 1: /home/lauscher/git/ud3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-3_3lzrpt/pycurl_457dc6203ed44295b24f9ca3ec174c00/setup.py'"'"'; __file__='"'"'/tmp/pip-install-3_3lzrpt/pycurl_457dc6203ed44295b24f9ca3ec174c00/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-8ive146d/install-record.txt --single-version-externally-managed --compile --install-headers /home/lauscher/git/ud3/include/site/python3.9/pycurl Check the logs for full command output. ```

I could fix this with installing libgnutls28-dev. Now this step completes.

The step

nosetests -v --with-coverage --cover-package=udocker tests/unit

shows several 'ok' and some errors. Because I don't know what is checked exactly (syntax and code style?), I can't assess its meaning.

The results of the further tests also tell me nothing, but seem to be ok:

pylint --rcfile=pylintrc --disable=R,C udocker
bandit -r udocker -f html -o bandit.html

Currently I run ./udocker_test.sh, it seems to take some time.

[vsoch]

Hmm, it probably would make sense to list the system dependencies somewhere or provide a container. I must have lucked out that I had them.

[mariojmdavid]

"Nose’s tagline is “nose extends unittest to make testing easier”. It’s is a fairly well known python unit test framework, and can run doctests, unittests, and “no boilerplate” tests." https://pythontesting.net/framework/nose/nose-introduction/

"Pylint is a Python static code analysis tool which looks for programming errors, helps enforcing a coding standard, sniffs for code smells and offers simple refactoring suggestions." https://pypi.org/project/pylint/

"Bandit is a tool designed to find common security issues in Python code. To do this Bandit processes each file, builds an AST from it, and runs appropriate plugins against the AST nodes. Once Bandit has finished scanning all the files it generates a report." https://pypi.org/project/bandit/

I hope this clarifies what tests are being preformed

[mariojmdavid]

./udocker_test.sh and ./udocker_test-run.sh it may take more or less time, it depends on the one hand on your internet bandwidth since both download docker images from dockerhub, and depend on you laptop or desktop performance, since they execute the CLI including running containers, import and exporting the containers etc., in my desktop ./udocker_test.sh took about 46 sec. ./udocker_test-run.sh took about 1min 33 sec

[mviereck]

./udocker_test.sh and ./udocker_test-run.sh it may take more or less time, it depends on the one hand on your internet bandwidth since both download docker images from dockerhub, I did not measure the time, but after about half an hour I put the laptop aside.

Yes, the internet bandwith was the bottleneck here.

udocker_test.sh showed one minor error:

tar img file exists https://download.ncg.ingrid.pt/webdav/udocker_test/centos7.tar
------------------------------------------------------------>
Error: failed to extract container: centos7.tar
Error: load failed

[FAIL]    T028: udocker load -i centos7.tar

It makes sense to collect all errors and show them altogether when the script has finished. I found this one scrolling through the output.

I hope this clarifies what tests are being preformed

Thank you! Yes that helps. So nosetests, pylint and bandit run code checks, while udocker-test.sh and udocker_test-run.sh run tests on user level. This is basically said in the instructions, could however be a bit more pointed out. The tests required by JOSS are fulfilled with the high level tests, the code checks are a nice bonus.

Hmm, it probably would make sense to list the system dependencies somewhere or provide a container.

A similar/additional thought: udocker-test.sh and udocker_test-run.sh must not have an already existing ~/.udocker. It would be good if the tests are possible nonetheless, either in a container or using another directory than ~/.udocker for the tests, maybe set with one of the environment variables to something like /tmp/udocker-test. That would allow to run the test scripts at any time.

[jorge-lip]

Many thanks for the suggestions we will address those in a future release.

[mviereck]

I've run udocker_test-run.sh and got some errors. Likely caused by damaged image downloads caused by limited bandwith. The same suggestion as above: Please collect the errors and print a summary at the end. Looking only at the final output would currrently suggest that everything went well. Even echo $? printed 0 although errors occured.

``` $ ./udocker_test-run.sh ============================================= * This script tests udocker run and options * * and volume mount options * ============================================= Info: creating repo: /home/lauscher/.udocker Info: udocker command line interface 1.3.0 Info: searching for udockertools 1.2.8 Info: installing udockertools 1.2.8 Info: installation of udockertools successful Error: invalid container id Error: invalid container id Error: invalid container id Info: deleting image: centos:7 Error: deleting image Info: deleting image: ubuntu:18.04 Error: deleting image Info: deleting image: java Error: deleting image Info: downloading layer sha256:2d473b07cdd5f0912cd6f1a703352c82b512407db6b05b43f2553732b55df3bc Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: downloading layer sha256:25fa05cd42bd8fabb25d2a6f3f8c9f7ab34637903d00fd2ed1c1d0fa980427dd Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: downloading layer sha256:5040bd2983909aa8896b9932438c3f1479d25ae837a5f6220242a264d0221f2d Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: downloading layer sha256:fce5728aad85a763fe3c419db16885eb6f7a670a42824ea618414b8fb309ccde Info: downloading layer sha256:76610ec20bf5892e24cebd4153c7668284aa1d1151b7c3b0c7d50c579aa5ce75 Info: downloading layer sha256:60170fec2151d2108ed1420625c51138434ba4e0223d3023353d3f32ffe3cfc2 Info: downloading layer sha256:e98f73de8f0d2ef292f58b004d67bc6e9ee779dcfaff7ebb3964649d4787b872 Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: downloading layer sha256:11f7af24ed9cf47597dd6cf9963bb3e9109c963f0135e869a9e9b4999fdc12a3 Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: downloading layer sha256:49e2d6393f32abb1de7c9395c04c822ceb2287383d5a90998f7bd8dbfd43d48c Info: downloading layer sha256:bb9cdec9c7f337940f7d872274353b66e118412cbfd433c711361bcf7922aea4 REPOSITORY ubuntu:18.04 . centos:7 . java:latest . c02f1b7f-2124-3322-be7b-7b2a5dca66b1 73474c75-0894-3b4a-99e2-ed56b0cffaf7 4d89fa47-3cb1-33c1-b623-0a2195cd31a9 CONTAINER ID P M NAMES IMAGE 4d89fa47-3cb1-33c1-b623-0a2195cd31a9 . W ['jv'] java:latest 73474c75-0894-3b4a-99e2-ed56b0cffaf7 . W ['ub18'] ubuntu:18.04 c02f1b7f-2124-3322-be7b-7b2a5dca66b1 . W ['c7'] centos:7 ==================== * Test udocker run * ==================== ===================================== execmode = P1 execmode: P1 nvidiamode: False [OK] T006: udocker setup jv ------------------------------------------------------------> ****************************************************************************** * * * STARTING 4d89fa47-3cb1-33c1-b623-0a2195cd31a9 * * * ****************************************************************************** executing: java proot info: vpid 2: terminated with signal 11 proot info: vpid 1: terminated with signal 11 [FAIL] T007: udocker run jv java -version ------------------------------------------------------------> execmode: P1 nvidiamode: False [OK] T008: udocker setup c7 ------------------------------------------------------------> ****************************************************************************** * * * STARTING c02f1b7f-2124-3322-be7b-7b2a5dca66b1 * * * ****************************************************************************** executing: env TERM=xterm-256color PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PROOT_TMP_DIR=/tmp USERNAME=root container_uuid=c02f1b7f-2124-3322-be7b-7b2a5dca66b1 SHLVL=0 container_names=c7 LOGNAME=root USER=root HOME=/root container_execmode=P1 container_ruser=lauscher PS1=c02f1b7f# container_root=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT PWD=/root [OK] T009: udocker run c7 env|sort ------------------------------------------------------------> execmode: P1 nvidiamode: False [OK] T010: udocker setup ub18 ------------------------------------------------------------> ****************************************************************************** * * * STARTING 73474c75-0894-3b4a-99e2-ed56b0cffaf7 * * * ****************************************************************************** executing: env TERM=xterm-256color PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PROOT_TMP_DIR=/tmp USERNAME=root container_uuid=73474c75-0894-3b4a-99e2-ed56b0cffaf7 SHLVL=0 container_names=ub18 LOGNAME=root USER=root HOME=/root container_execmode=P1 container_ruser=lauscher PS1=73474c75# container_root=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT PWD=/root [OK] T011: udocker run ub18 env|sort ------------------------------------------------------------> ===================================== execmode = P2 [OK] T006: udocker setup --execmode=P2 jv ------------------------------------------------------------> ****************************************************************************** * * * STARTING 4d89fa47-3cb1-33c1-b623-0a2195cd31a9 * * * ****************************************************************************** executing: java proot info: vpid 2: terminated with signal 11 proot info: vpid 1: terminated with signal 11 [FAIL] T007: udocker run jv java -version ------------------------------------------------------------> [OK] T012: udocker setup --execmode=P2 c7 ------------------------------------------------------------> ****************************************************************************** * * * STARTING c02f1b7f-2124-3322-be7b-7b2a5dca66b1 * * * ****************************************************************************** executing: env TERM=xterm-256color PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PROOT_TMP_DIR=/tmp USERNAME=root container_uuid=c02f1b7f-2124-3322-be7b-7b2a5dca66b1 SHLVL=0 container_names=c7 PROOT_NO_SECCOMP=1 LOGNAME=root USER=root HOME=/root container_execmode=P2 container_ruser=lauscher PS1=c02f1b7f# container_root=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT PWD=/root [OK] T013: udocker run c7 env|sort ------------------------------------------------------------> [OK] T014: udocker setup --execmode=P2 ub18 ------------------------------------------------------------> ****************************************************************************** * * * STARTING 73474c75-0894-3b4a-99e2-ed56b0cffaf7 * * * ****************************************************************************** executing: env TERM=xterm-256color PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PROOT_TMP_DIR=/tmp USERNAME=root container_uuid=73474c75-0894-3b4a-99e2-ed56b0cffaf7 SHLVL=0 container_names=ub18 PROOT_NO_SECCOMP=1 LOGNAME=root USER=root HOME=/root container_execmode=P2 container_ruser=lauscher PS1=73474c75# container_root=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT PWD=/root [OK] T015: udocker run ub18 env|sort ------------------------------------------------------------> ===================================== execmode = F1 [OK] T016: udocker setup --execmode=F1 c7 ------------------------------------------------------------> ############################################################################## # # # STARTING c02f1b7f-2124-3322-be7b-7b2a5dca66b1 # # # ############################################################################## executing: env LOGNAME=lauscher USER=lauscher PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_execmode=F1 HOME=/ PS1=c02f1b7f\$ LD_LIBRARY_PATH=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. TERM=xterm-256color FAKECHROOT_DIR_MAP=/tmp/udocker-22737-af9ff3c4-7d20-3199-9c76-ab78126e0720-passwd!/etc/passwd:/tmp/udocker-22737-e5b03e5f-446b-31e5-a2b6-39f2cbe623b7-group!/etc/group SHLVL=0 FAKECHROOT_EXCLUDE_PATH=/dev:/proc:/sys:/etc/resolv.conf:/etc/host.conf:/lib/modules container_ruser=lauscher container_names=c7 container_root=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT USERNAME=lauscher FAKECHROOT_BASE=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT LD_PRELOAD=/home/lauscher/.udocker/lib/libfakechroot-CentOS-7-x86_64.so FAKECHROOT_EXPAND_SYMLINKS=none container_uuid=c02f1b7f-2124-3322-be7b-7b2a5dca66b1 FAKECHROOT_ELFLOADER=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64/ld-linux-x86-64.so.2 PWD=/ FAKECHROOT_AF_UNIX_PATH=/tmp PROOT_TMP_DIR=/tmp FAKECHROOT=true FAKECHROOT_VERSION=2.18.1 [OK] T017: udocker run c7 env|sort ------------------------------------------------------------> [OK] T018: udocker setup --execmode=F1 ub18 ------------------------------------------------------------> ############################################################################## # # # STARTING 73474c75-0894-3b4a-99e2-ed56b0cffaf7 # # # ############################################################################## executing: env LOGNAME=lauscher USER=lauscher PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_execmode=F1 HOME=/ PS1=73474c75\$ LD_LIBRARY_PATH=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. TERM=xterm-256color FAKECHROOT_DIR_MAP=/tmp/udocker-22749-1f87db2b-1c7e-3fc9-bea3-438a2887d293-passwd!/etc/passwd:/tmp/udocker-22749-fcf69c43-f236-3bc0-be67-48d9a81da9c8-group!/etc/group SHLVL=0 FAKECHROOT_EXCLUDE_PATH=/dev:/proc:/sys:/etc/resolv.conf:/etc/host.conf:/lib/modules container_ruser=lauscher container_names=ub18 container_root=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT USERNAME=lauscher FAKECHROOT_BASE=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT LD_PRELOAD=/home/lauscher/.udocker/lib/libfakechroot-Ubuntu-18-x86_64.so FAKECHROOT_EXPAND_SYMLINKS=none container_uuid=73474c75-0894-3b4a-99e2-ed56b0cffaf7 FAKECHROOT_ELFLOADER=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64/ld-linux-x86-64.so.2 PWD=/ FAKECHROOT_AF_UNIX_PATH=/tmp PROOT_TMP_DIR=/tmp FAKECHROOT=true FAKECHROOT_VERSION=2.18.1 [OK] T019: udocker run ub18 env|sort ------------------------------------------------------------> ===================================== execmode = F2 [OK] T016: udocker setup --execmode=F2 c7 ------------------------------------------------------------> ############################################################################## # # # STARTING c02f1b7f-2124-3322-be7b-7b2a5dca66b1 # # # ############################################################################## executing: env LOGNAME=lauscher USER=lauscher PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_execmode=F2 HOME=/ PS1=c02f1b7f\$ LD_LIBRARY_PATH=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. TERM=xterm-256color FAKECHROOT_DIR_MAP=/tmp/udocker-22763-d73221dd-9ec4-353b-802d-49733bb6a25b-passwd!/etc/passwd:/tmp/udocker-22763-23c4bc2c-a7a7-33b3-80d4-d0c5e64541b2-group!/etc/group SHLVL=0 FAKECHROOT_EXCLUDE_PATH=/dev:/proc:/sys:/etc/resolv.conf:/etc/host.conf:/lib/modules LD_LIBRARY_REAL=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. FAKECHROOT_LIBRARY_ORIG=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. container_ruser=lauscher container_names=c7 container_root=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT USERNAME=lauscher FAKECHROOT_BASE=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT LD_PRELOAD=/home/lauscher/.udocker/lib/libfakechroot-CentOS-7-x86_64.so FAKECHROOT_EXPAND_SYMLINKS=none container_uuid=c02f1b7f-2124-3322-be7b-7b2a5dca66b1 FAKECHROOT_ELFLOADER=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64/ld-linux-x86-64.so.2 PWD=/ FAKECHROOT_AF_UNIX_PATH=/tmp PROOT_TMP_DIR=/tmp FAKECHROOT=true FAKECHROOT_VERSION=2.18.1 [OK] T017: udocker run c7 env|sort ------------------------------------------------------------> [OK] T018: udocker setup --execmode=F2 ub18 ------------------------------------------------------------> ############################################################################## # # # STARTING 73474c75-0894-3b4a-99e2-ed56b0cffaf7 # # # ############################################################################## executing: env LOGNAME=lauscher USER=lauscher PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_execmode=F2 HOME=/ PS1=73474c75\$ LD_LIBRARY_PATH=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. TERM=xterm-256color FAKECHROOT_DIR_MAP=/tmp/udocker-22771-fec6f6c3-d58b-37e9-a431-cf3d2873a882-passwd!/etc/passwd:/tmp/udocker-22771-f9d2e067-15f5-38d5-9d2c-73b6f05d2e7d-group!/etc/group SHLVL=0 FAKECHROOT_EXCLUDE_PATH=/dev:/proc:/sys:/etc/resolv.conf:/etc/host.conf:/lib/modules LD_LIBRARY_REAL=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. FAKECHROOT_LIBRARY_ORIG=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. container_ruser=lauscher container_names=ub18 container_root=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT USERNAME=lauscher FAKECHROOT_BASE=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT LD_PRELOAD=/home/lauscher/.udocker/lib/libfakechroot-Ubuntu-18-x86_64.so FAKECHROOT_EXPAND_SYMLINKS=none container_uuid=73474c75-0894-3b4a-99e2-ed56b0cffaf7 FAKECHROOT_ELFLOADER=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64/ld-linux-x86-64.so.2 PWD=/ FAKECHROOT_AF_UNIX_PATH=/tmp PROOT_TMP_DIR=/tmp FAKECHROOT=true FAKECHROOT_VERSION=2.18.1 [OK] T019: udocker run ub18 env|sort ------------------------------------------------------------> ===================================== execmode = F3 [OK] T006: udocker setup --execmode=F3 jv ------------------------------------------------------------> ############################################################################## # # # STARTING 4d89fa47-3cb1-33c1-b623-0a2195cd31a9 # # # ############################################################################## executing: java openjdk version "1.8.0_111" OpenJDK Runtime Environment (build 1.8.0_111-8u111-b14-2~bpo8+1-b14) OpenJDK 64-Bit Server VM (build 25.111-b14, mixed mode) [OK] T007: udocker run jv java -version ------------------------------------------------------------> [OK] T016: udocker setup --execmode=F3 c7 ------------------------------------------------------------> ############################################################################## # # # STARTING c02f1b7f-2124-3322-be7b-7b2a5dca66b1 # # # ############################################################################## executing: env LOGNAME=lauscher USER=lauscher PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_execmode=F3 HOME=/ PS1=c02f1b7f\$ LD_LIBRARY_PATH=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. TERM=xterm-256color FAKECHROOT_DIR_MAP=/tmp/udocker-25989-002088b0-e56d-31ff-95f6-f21874008577-passwd!/etc/passwd:/tmp/udocker-25989-b9c5e6a5-ed6c-30c8-9ea3-f2135e2e3ae6-group!/etc/group SHLVL=0 FAKECHROOT_EXCLUDE_PATH=/dev:/proc:/sys:/etc/resolv.conf:/etc/host.conf:/lib/modules LD_LIBRARY_REAL=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. FAKECHROOT_LIBRARY_ORIG=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. container_ruser=lauscher container_names=c7 container_root=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT USERNAME=lauscher FAKECHROOT_BASE=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT LD_PRELOAD=/home/lauscher/.udocker/lib/libfakechroot-CentOS-7-x86_64.so FAKECHROOT_EXPAND_SYMLINKS=none container_uuid=c02f1b7f-2124-3322-be7b-7b2a5dca66b1 PWD=/ FAKECHROOT_AF_UNIX_PATH=/tmp PROOT_TMP_DIR=/tmp FAKECHROOT=true FAKECHROOT_VERSION=2.18.1 [OK] T017: udocker run c7 env|sort ------------------------------------------------------------> [OK] T018: udocker setup --execmode=F3 ub18 ------------------------------------------------------------> ############################################################################## # # # STARTING 73474c75-0894-3b4a-99e2-ed56b0cffaf7 # # # ############################################################################## executing: env LOGNAME=lauscher USER=lauscher PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_execmode=F3 HOME=/ PS1=73474c75\$ LD_LIBRARY_PATH=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. TERM=xterm-256color FAKECHROOT_DIR_MAP=/tmp/udocker-26581-a84646fe-b20f-373b-9443-b2ce5006110d-passwd!/etc/passwd:/tmp/udocker-26581-aeec5786-6df8-3391-9b88-1e2e4abb806b-group!/etc/group SHLVL=0 FAKECHROOT_EXCLUDE_PATH=/dev:/proc:/sys:/etc/resolv.conf:/etc/host.conf:/lib/modules LD_LIBRARY_REAL=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. FAKECHROOT_LIBRARY_ORIG=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. container_ruser=lauscher container_names=ub18 container_root=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT USERNAME=lauscher FAKECHROOT_BASE=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT LD_PRELOAD=/home/lauscher/.udocker/lib/libfakechroot-Ubuntu-18-x86_64.so FAKECHROOT_EXPAND_SYMLINKS=none container_uuid=73474c75-0894-3b4a-99e2-ed56b0cffaf7 PWD=/ FAKECHROOT_AF_UNIX_PATH=/tmp PROOT_TMP_DIR=/tmp FAKECHROOT=true FAKECHROOT_VERSION=2.18.1 [OK] T019: udocker run ub18 env|sort ------------------------------------------------------------> ===================================== execmode = F4 [OK] T006: udocker setup --execmode=F4 jv ------------------------------------------------------------> ############################################################################## # # # STARTING 4d89fa47-3cb1-33c1-b623-0a2195cd31a9 # # # ############################################################################## executing: java openjdk version "1.8.0_111" OpenJDK Runtime Environment (build 1.8.0_111-8u111-b14-2~bpo8+1-b14) OpenJDK 64-Bit Server VM (build 25.111-b14, mixed mode) [OK] T007: udocker run jv java -version ------------------------------------------------------------> [OK] T016: udocker setup --execmode=F4 c7 ------------------------------------------------------------> ############################################################################## # # # STARTING c02f1b7f-2124-3322-be7b-7b2a5dca66b1 # # # ############################################################################## executing: env FAKECHROOT_PATCH_PATCHELF=/home/lauscher/.udocker/bin/patchelf-x86_64 FAKECHROOT_PATCH_LAST_TIME=1624009865 LOGNAME=lauscher USER=lauscher PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_execmode=F4 HOME=/ PS1=c02f1b7f\$ LD_LIBRARY_PATH=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. TERM=xterm-256color FAKECHROOT_PATCH_ELFLOADER=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64/ld-linux-x86-64.so.2 FAKECHROOT_DIR_MAP=/tmp/udocker-26614-b9c06096-f0a0-36fa-9e2c-f4a8724ca884-passwd!/etc/passwd:/tmp/udocker-26614-f70f9cf1-b2f8-3b6a-bb53-b4dd0d4cf1af-group!/etc/group SHLVL=0 FAKECHROOT_EXCLUDE_PATH=/dev:/proc:/sys:/etc/resolv.conf:/etc/host.conf:/lib/modules LD_LIBRARY_REAL=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. FAKECHROOT_LIBRARY_ORIG=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/libexec/coreutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/gconv:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/sasl2:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/nss:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/elfutils:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/python2.7/site-packages:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/openssl/engines:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/rtkaio:/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT/usr/lib64/libuser:. container_ruser=lauscher container_names=c7 container_root=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT USERNAME=lauscher FAKECHROOT_BASE=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT LD_PRELOAD=/home/lauscher/.udocker/lib/libfakechroot-CentOS-7-x86_64.so FAKECHROOT_EXPAND_SYMLINKS=none container_uuid=c02f1b7f-2124-3322-be7b-7b2a5dca66b1 PWD=/ FAKECHROOT_AF_UNIX_PATH=/tmp PROOT_TMP_DIR=/tmp FAKECHROOT=true FAKECHROOT_VERSION=2.18.1 [OK] T017: udocker run c7 env|sort ------------------------------------------------------------> [OK] T018: udocker setup --execmode=F4 ub18 ------------------------------------------------------------> ############################################################################## # # # STARTING 73474c75-0894-3b4a-99e2-ed56b0cffaf7 # # # ############################################################################## executing: env FAKECHROOT_PATCH_PATCHELF=/home/lauscher/.udocker/bin/patchelf-x86_64 FAKECHROOT_PATCH_LAST_TIME=1624009882 LOGNAME=lauscher USER=lauscher PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_execmode=F4 HOME=/ PS1=73474c75\$ LD_LIBRARY_PATH=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. TERM=xterm-256color FAKECHROOT_PATCH_ELFLOADER=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64/ld-linux-x86-64.so.2 FAKECHROOT_DIR_MAP=/tmp/udocker-26625-7656cb58-13e4-34b8-b5e1-9c015be1372b-passwd!/etc/passwd:/tmp/udocker-26625-4aa4c036-4835-305d-864f-88f9a262abf3-group!/etc/group SHLVL=0 FAKECHROOT_EXCLUDE_PATH=/dev:/proc:/sys:/etc/resolv.conf:/etc/host.conf:/lib/modules LD_LIBRARY_REAL=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. FAKECHROOT_LIBRARY_ORIG=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib64:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT//lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/gconv:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/usr/lib/x86_64-linux-gnu/coreutils:/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT/lib/x86_64-linux-gnu:. container_ruser=lauscher container_names=ub18 container_root=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT USERNAME=lauscher FAKECHROOT_BASE=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT LD_PRELOAD=/home/lauscher/.udocker/lib/libfakechroot-Ubuntu-18-x86_64.so FAKECHROOT_EXPAND_SYMLINKS=none container_uuid=73474c75-0894-3b4a-99e2-ed56b0cffaf7 PWD=/ FAKECHROOT_AF_UNIX_PATH=/tmp PROOT_TMP_DIR=/tmp FAKECHROOT=true FAKECHROOT_VERSION=2.18.1 [OK] T019: udocker run ub18 env|sort ------------------------------------------------------------> ===================================== execmode = R1 [OK] T006: udocker setup --execmode=R1 jv ------------------------------------------------------------> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % % STARTING 4d89fa47-3cb1-33c1-b623-0a2195cd31a9 % % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% executing: java openjdk version "1.8.0_111" OpenJDK Runtime Environment (build 1.8.0_111-8u111-b14-2~bpo8+1-b14) OpenJDK 64-Bit Server VM (build 25.111-b14, mixed mode) [OK] T007: udocker run jv java -version ------------------------------------------------------------> [OK] T020: udocker setup --execmode=R1 c7 ------------------------------------------------------------> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % % STARTING c02f1b7f-2124-3322-be7b-7b2a5dca66b1 % % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% executing: env USERNAME=root TERM=xterm-256color PS1=c02f1b7f# container_uuid=c02f1b7f-2124-3322-be7b-7b2a5dca66b1 SHLVL=0 container_names=c7 LOGNAME=root USER=root HOME=/root container_execmode=R1 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_ruser=lauscher PROOT_TMP_DIR=/tmp container_root=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT [OK] T021: udocker run c7 env|sort ------------------------------------------------------------> [OK] T022: udocker setup --execmode=R1 ub18 ------------------------------------------------------------> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % % STARTING 73474c75-0894-3b4a-99e2-ed56b0cffaf7 % % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% executing: env USERNAME=root TERM=xterm-256color PS1=73474c75# container_uuid=73474c75-0894-3b4a-99e2-ed56b0cffaf7 SHLVL=0 container_names=ub18 LOGNAME=root USER=root HOME=/root container_execmode=R1 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_ruser=lauscher PROOT_TMP_DIR=/tmp container_root=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT [OK] T023: udocker run ub18 env|sort ------------------------------------------------------------> ===================================== execmode = R2 [OK] T006: udocker setup --execmode=R2 jv ------------------------------------------------------------> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % % STARTING 4d89fa47-3cb1-33c1-b623-0a2195cd31a9 % % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% executing: java openjdk version "1.8.0_111" OpenJDK Runtime Environment (build 1.8.0_111-8u111-b14-2~bpo8+1-b14) OpenJDK 64-Bit Server VM (build 25.111-b14, mixed mode) [OK] T007: udocker run jv java -version ------------------------------------------------------------> [OK] T024: udocker setup --execmode=R2 c7 ------------------------------------------------------------> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % % STARTING c02f1b7f-2124-3322-be7b-7b2a5dca66b1 % % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% executing: env USERNAME=root TERM=xterm-256color PS1=c02f1b7f# container_uuid=c02f1b7f-2124-3322-be7b-7b2a5dca66b1 SHLVL=0 container_names=c7 LOGNAME=root USER=root HOME=/root container_execmode=R2 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_ruser=lauscher PROOT_TMP_DIR=/tmp container_root=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT PROOT_NO_SECCOMP=1 PWD=/root [OK] T025: udocker run c7 env|sort ------------------------------------------------------------> [OK] T026: udocker setup --execmode=R2 ub18 ------------------------------------------------------------> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % % STARTING 73474c75-0894-3b4a-99e2-ed56b0cffaf7 % % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% executing: env USERNAME=root TERM=xterm-256color PS1=73474c75# container_uuid=73474c75-0894-3b4a-99e2-ed56b0cffaf7 SHLVL=0 container_names=ub18 LOGNAME=root USER=root HOME=/root container_execmode=R2 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_ruser=lauscher PROOT_TMP_DIR=/tmp container_root=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT PROOT_NO_SECCOMP=1 PWD=/root [OK] T027: udocker run ub18 env|sort ------------------------------------------------------------> ===================================== execmode = R3 [OK] T006: udocker setup --execmode=R3 jv ------------------------------------------------------------> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % % STARTING 4d89fa47-3cb1-33c1-b623-0a2195cd31a9 % % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% executing: java openjdk version "1.8.0_111" OpenJDK Runtime Environment (build 1.8.0_111-8u111-b14-2~bpo8+1-b14) OpenJDK 64-Bit Server VM (build 25.111-b14, mixed mode) [OK] T007: udocker run jv java -version ------------------------------------------------------------> [OK] T028: udocker setup --execmode=R3 c7 ------------------------------------------------------------> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % % STARTING c02f1b7f-2124-3322-be7b-7b2a5dca66b1 % % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% executing: env USERNAME=root TERM=xterm-256color PS1=c02f1b7f# container_uuid=c02f1b7f-2124-3322-be7b-7b2a5dca66b1 SHLVL=0 container_names=c7 LOGNAME=root USER=root HOME=/root container_execmode=R3 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_ruser=lauscher PROOT_TMP_DIR=/tmp container_root=/home/lauscher/.udocker/containers/c02f1b7f-2124-3322-be7b-7b2a5dca66b1/ROOT PROOT_NO_SECCOMP=1 PWD=/root [OK] T029: udocker run c7 env|sort ------------------------------------------------------------> [OK] T030: udocker setup --execmode=R3 ub18 ------------------------------------------------------------> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % % % STARTING 73474c75-0894-3b4a-99e2-ed56b0cffaf7 % % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% executing: env USERNAME=root TERM=xterm-256color PS1=73474c75# container_uuid=73474c75-0894-3b4a-99e2-ed56b0cffaf7 SHLVL=0 container_names=ub18 LOGNAME=root USER=root HOME=/root container_execmode=R3 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin container_ruser=lauscher PROOT_TMP_DIR=/tmp container_root=/home/lauscher/.udocker/containers/73474c75-0894-3b4a-99e2-ed56b0cffaf7/ROOT PROOT_NO_SECCOMP=1 PWD=/root [OK] T031: udocker run ub18 env|sort ------------------------------------------------------------> $ echo $? 0 ```

[jorge-lip]

The two test scripts have been improved to display a summary of the failed tests upon exit, when failures occur. The exit status also reflects the errors.

[mviereck]

The two test scripts have been improved to display a summary of the failed tests upon exit, when failures occur. The exit status also reflects the errors.

Great! Just did a test run with udocker-test.sh. It shows some curl timeout errors, but overall success. Is that correct?

``` $ ./udocker_test.sh ================================================= * This script tests all udocker CLI and options * * except the run command and vol. mount options * ================================================= Info: creating repo: /home/lauscher/.udocker Info: udocker command line interface 1.3.0 Info: searching for udockertools 1.2.8 Info: installing udockertools 1.2.8 Info: installation of udockertools successful /home/lauscher/.udocker/bin/proot-x86_64 [OK] T001: udocker install ------------------------------------------------------------> Info: udocker command line interface 1.3.0 Info: searching for udockertools 1.2.8 Info: installing udockertools 1.2.8 Info: installation of udockertools successful [OK] T002: udocker install --force ------------------------------------------------------------> Syntax: udocker [general_options] [command_options] udocker [-h|--help|help] :Display this help and exits udocker [-V|--version|version] :Display udocker and tarball version and exits General options common to all commands must appear before the command: -D, --debug :Debug -q, --quiet :Less verbosity --insecure :Allow insecure non authenticated https --repo= :Use repository at directory --allow-root :Allow execution by root NOT recommended --config= :Use configuration Commands: --help [command] :Command specific help showconf :Print all configuration options search :Search dockerhub for container images pull :Pull container image from dockerhub create :Create container from a pulled image run :Execute created container run :Pull, create and execute container images -l :List container images ps -m -s :List created containers name :Give name to container rmname :Delete name from container rename :Change container name clone :Duplicate container rm :Delete container rmi :Delete image import :Import tar file (exported by docker) import - :Import from stdin (exported by docker) export -o :Export container directory tree to file export - :Export container directory tree to stdin load -i :Load image from file (saved by docker) load :Load image from stdin (saved by docker) save -o :Save image with layers to file inspect -p :Return low level information on image verify :Verify a pulled image protect :Protect repository unprotect :Unprotect repository protect :Protect container unprotect :Unprotect container mkrepo :Create another repository in location setup --execmode= :Change container execution mode setup --nvidia :Setup container to use nvidia GPU setup --purge :clean mountpoints and files created by udocker setup --fixperm :attempt to fix file permissions login :Login into docker repository logout :Logout from docker repository Examples: udocker search expression udocker search quay.io/expression udocker search --list-tags myimage udocker pull myimage:mytag udocker images udocker create --name=mycontainer myimage:mytag udocker ps -m -s udocker inspect mycontainer udocker inspect -p mycontainer udocker run mycontainer cat /etc/redhat-release udocker run --hostauth --hostenv --bindhome mycontainer udocker run --user=root mycontainer yum install firefox udocker run --hostauth --hostenv --bindhome mycontainer firefox udocker run --entrypoint="" mycontainer /bin/bash -i udocker run --entrypoint="/bin/bash" mycontainer -i udocker clone --name=anotherc mycontainer udocker rm anotherc udocker mkrepo /data/myrepo udocker --repo=/data/myrepo load -i docker-saved-repo.tar udocker --repo=/data/myrepo images udocker --repo=/data/myrepo run --user=$USER myimage:mytag udocker export -o myimage.tar mycontainer udocker import myimage.tar mynewimage udocker create --name=mynewc mynewimage udocker export --clone -o mycontainer.tar mycontainer udocker import --clone mycontainer.tar Notes: * by default the binaries, images and containers are placed in $HOME/.udocker * by default the following host directories are mounted in the container: /dev /proc /sys /etc/resolv.conf /etc/host.conf /etc/hostname * to prevent the mount of the above directories use: run --nosysdirs * additional host directories to be mounted are specified with: run --volume=/data:/mnt --volume=/etc/hosts run --nosysdirs --volume=/dev --volume=/proc * udocker provides several execution modes that offer different approaches and technologies to execute containers, they can be selected using the setup command. See the setup help. udocker setup --execmode=F3 fedx udocker setup --execmode=R1 fedx udocker setup --execmode=S1 fedx udocker setup --help * udocker facilitates the usage of nvidia drivers within containers udocker setup --nvidia fedx See: https://github.com/indigo-dc/udocker/blob/master/SUMMARY.md [OK] T003: udocker (with no options) ------------------------------------------------------------> [OK] T004: udocker help ------------------------------------------------------------> [OK] T005: udocker -h ------------------------------------------------------------> -------------------------------------------------------------------------------- Configuration options docdir = None invalid_host_env = ('VTE_VERSION',) cmd = ['/bin/bash', '-i'] dockerio_index_url = https://hub.docker.com cpu_affinity_exec_tools = (['numactl', '-C', '%s', '--'], ['taskset', '-c', '%s']) proot_killonexit = True lib_dirs_list_append = ('.',) http_proxy = sysdirs_list = ('/dev', '/proc', '/sys', '/etc/resolv.conf', '/etc/host.conf', '/lib/modules') use_proot_executable = UDOCKER use_curl_executable = lib_dirs_list_x86_64 = ('/usr/lib/x86_64-linux-gnu', '/usr/lib64') mountpoint_prefixes = ('/etc',) tarball_release = 1.2.8 nvi_lib_list = ['libOpenCL.', 'libcuda.', 'libnvcuvid.', 'libnvidia-cfg.', 'libnvidia-compiler.', 'libnvidia-encode.', 'libnvidia-fatbinaryloader.', 'libnvidia-fbc.', 'libnvidia-ifr.', 'libnvidia-ml.', 'libnvidia-opencl.', 'libnvidia-ptxjitcompiler.', 'libnvidia-tls.', 'tls/libnvidia-tls.'] tmpdir = /tmp nvi_etc_list = ['vulkan/icd.d/nvidia_icd.json', 'OpenCL/vendors/nvidia.icd'] keystore = keystore dri_list = ('/usr/lib64/dri', '/lib64/dri', '/usr/lib/dri', '/lib/dri') runc_nomqueue = None http_agent = homedir = /home/lauscher/.udocker fakechroot_expand_symlinks = none lib_dirs_list_essential = ('/lib/x86_64-linux-gnu', '/usr/lib/x86_64-linux-gnu', '/lib64', '/usr/lib64', '/lib', '/usr/lib') use_singularity_executable = libdir = None tarball = https://download.ncg.ingrid.pt/webdav/udocker/udocker-englib-1.2.8.tar.gz https://raw.githubusercontent.com/jorge-lip/udocker-builds/master/tarballs/udocker-englib-1.2.8.tar.gz nvi_dev_list = ['/dev/nvidia'] installretry = 3 dockerio_registry_url = https://registry.hub.docker.com http_insecure = False layersdir = None config = udocker.conf singularity_options = ['-w'] bindir = None location = valid_host_env = ('TERM', 'PATH', 'PROOT_TMP_DIR') verbose_level = 3 timeout = 12 proot_noseccomp = None runc_capabilities = ['CAP_KILL', 'CAP_NET_BIND_SERVICE', 'CAP_CHOWN', 'CAP_DAC_OVERRIDE', 'CAP_FOWNER', 'CAP_FSETID', 'CAP_KILL', 'CAP_SETGID', 'CAP_SETUID', 'CAP_SETPCAP', 'CAP_NET_BIND_SERVICE', 'CAP_NET_RAW', 'CAP_SYS_CHROOT', 'CAP_MKNOD', 'CAP_AUDIT_WRITE', 'CAP_SETFCAP'] download_timeout = 1800 default_execution_mode = P1 ld_so_cache = /etc/ld.so.cache installinfo = ['https://raw.githubusercontent.com/indigo-dc/udocker/master/messages'] use_runc_executable = fakechroot_so = None autoinstall = True docker_registries = {'docker.io': ['https://registry.hub.docker.com', 'https://hub.docker.com']} topdir = /home/lauscher/.udocker containersdir = None root_path = /usr/sbin:/sbin:/usr/bin:/bin reposdir = None nvi_bin_list = ['nvidia-bug-report.sh', 'nvidia-cuda-mps-control', 'nvidia-cuda-mps-server', 'nvidia-debugdump', 'nvidia-installer', 'nvidia-persistenced', 'nvidia-settings', 'nvidia-smi', 'nvidia-uninstall', 'nvidia-xconfig'] user_path = /usr/local/bin:/usr/bin:/bin ctimeout = 6 access_files = ('/sys/class/infiniband', '/dev/open-mx', '/dev/myri0', '/dev/myri1', '/dev/myri2', '/dev/myri3', '/dev/myri4', '/dev/myri5', '/dev/myri6', '/dev/myri7', '/dev/myri8', '/dev/myri9', '/dev/ipath', '/dev/kgni0', '/dev/mic/scif', '/dev/scif') -------------------------------------------------------------------------------- [OK] T006: udocker showconf ------------------------------------------------------------> version: 1.3.0 tarball: https://download.ncg.ingrid.pt/webdav/udocker/udocker-englib-1.2.8.tar.gz https://raw.githubusercontent.com/jorge-lip/udocker-builds/master/tarballs/udocker-englib-1.2.8.tar.gz tarball_release: 1.2.8 [OK] T007: udocker version ------------------------------------------------------------> Info: using curl executable version: 1.3.0 tarball: https://download.ncg.ingrid.pt/webdav/udocker/udocker-englib-1.2.8.tar.gz https://raw.githubusercontent.com/jorge-lip/udocker-builds/master/tarballs/udocker-englib-1.2.8.tar.gz tarball_release: 1.2.8 [OK] T008: udocker -D version ------------------------------------------------------------> version: 1.3.0 tarball: https://download.ncg.ingrid.pt/webdav/udocker/udocker-englib-1.2.8.tar.gz https://raw.githubusercontent.com/jorge-lip/udocker-builds/master/tarballs/udocker-englib-1.2.8.tar.gz tarball_release: 1.2.8 [OK] T009: udocker --quiet version ------------------------------------------------------------> version: 1.3.0 tarball: https://download.ncg.ingrid.pt/webdav/udocker/udocker-englib-1.2.8.tar.gz https://raw.githubusercontent.com/jorge-lip/udocker-builds/master/tarballs/udocker-englib-1.2.8.tar.gz tarball_release: 1.2.8 [OK] T010: udocker -q version ------------------------------------------------------------> Info: using curl executable version: 1.3.0 tarball: https://download.ncg.ingrid.pt/webdav/udocker/udocker-englib-1.2.8.tar.gz https://raw.githubusercontent.com/jorge-lip/udocker-builds/master/tarballs/udocker-englib-1.2.8.tar.gz tarball_release: 1.2.8 [OK] T011: udocker --debug version ------------------------------------------------------------> [OK] T012: udocker -V ------------------------------------------------------------> [OK] T013: udocker --version ------------------------------------------------------------> gromacs/gromacs ---- GROMACS molecular dynamics simulations 5 gromacs/gmx-configurations ---- GROMACS built in different configurations, used in builder pattern for 0 gromacs/ci-docs-llvm-master ---- 0 gromacs/cmake-3.13.0-llvm-8-tsan-master ---- 0 gromacs/cmake-3.15.7-llvm-9-openmpi-master ---- 0 gromacs/cmake-3.13.0-gcc-7-amdopencl-clfft-openmpi-master ---- 0 gromacs/cmake-3.15.7-gcc-8-cuda-11.0-nvidiaopencl-clfft-openmpi-master ---- 1 gromacs/ci-docs-llvm ---- 0 gromacs/cmake-3.17.2-oneapi-2021.1-beta08-master ---- 0 gromacs/fftw ---- Containerized libfftw for use in containerized builds of GROMACS using 0 gromacs/ci-ubuntu-18.04-llvm-8-tsan ---- 0 gromacs/cmake-3.15.7-llvm-9-openmpi ---- 0 gromacs/ci-ubuntu-18.04-llvm-9 ---- 0 gromacs/cmake-3.17.2-oneapi-2021.1-beta09-master ---- 0 gromacs/ci-ubuntu-18.04-llvm-7-docs ---- 0 gromacs/ci-ubuntu-18.04-gcc-8-cuda-11.0 ---- 0 gromacs/ci-ubuntu-18.04-gcc-7-oneapi-2021.1-beta09 ---- 0 gromacs/ci-ubuntu-18.04-gcc-7 ---- 0 gromacs/cmake-3.15.7-llvm-8-intelopencl-openmpi ---- 0 gromacs/cmake-3.13.0-llvm-8-tsan ---- 0 gromacs/cmake-3.15.7-gcc-8-cuda-10.1-nvidiaopencl-clfft-openmpi-master ---- 0 gromacs/cmake-3.15.7-llvm-8-cuda-10.1-openmpi-master ---- 0 gromacs/cmake-3.13.0-gcc-7-amdopencl-clfft-openmpi ---- 0 gromacs/ci-ubuntu-18.04-llvm-8-cuda-10.0 ---- 0 gromacs/continuous-integration ---- Storage of images used for running CI jobs 0 gromacs/gitlab-runner ---- 0 gromacs/cmake-3.11.4-llvm-8-openmpi ---- 0 gromacs/cmake-3.9.6-gcc-5-cuda-9.0-openmpi ---- 0 gromacs/ci-clang-7 ---- 0 gromacs/gitlab-runner-helper ---- 0 gromacs/ci-gcc-7 ---- 0 gromacs/cmake-3.15.7-gcc-8-cuda-10.1-nvidiaopencl-clfft-openmpi ---- 0 gromacs/cmake-3.15.7-llvm-8-tsan ---- 0 gromacs/ci-docs-gcc ---- 0 gromacs/cmake-3.9.6-gcc-6-cuda-10.1-nvidiaopencl-clfft-openmpi ---- 0 gromacs/cmake-3.9.6-gcc-7-amdopencl-clfft-openmpi ---- 0 gromacs/base ---- 0 gromacs/cmake-3.15.7-llvm-8-cuda-10.1-openmpi ---- 0 gromacs/ci-ubuntu-20.04-gcc-10 ---- 0 Error: in download: curl: (28) Operation timed out after 6000 milliseconds with 0 out of 0 bytes received gromacs/ci-gcc-8 ---- 0 gromacs/cmake-3.9.6-llvm-3.6-amdopencl-openmpi ---- 0 gromacs/ci-docs-clang ---- 0 gromacs/ci-clang-6 ---- 0 gromacs/ci-clang-8 ---- 0 gromacs/cmake-3.15.7-gcc-8-cuda-10.1-openmpi ---- 0 gromacs/ci-gcc-8-cuda-10.2 ---- 0 gromacs/cmake-3.13.0-llvm-9-amdopencl ---- 0 gromacs/ci-ubuntu-18.04-llvm-8-cuda-11.0 ---- 0 gromacs/cmake-3.13.0-llvm-9-amdopencl-openmpi ---- 0 gromacs/cmake-3.15.7-gcc-8-cuda-11.0-nvidiaopencl-clfft-openmpi ---- 0 gromacs/cmake-3.13.0-llvm-9-intelopencl-openmpi ---- 0 gromacs/cmake-3.9.6-gcc-9-cuda-10.0-openmpi ---- 0 gromacs/ci-ubuntu-18.04-gcc-9 ---- 0 gromacs/cmake-3.9.6-llvm-8-amdopencl-openmpi ---- 0 gromacs/ci-gcc-5 ---- 0 gromacs/ci-gcc-6 ---- 0 gromacs/cmake-3.15.7-llvm-8-cuda-10.0-openmpi ---- 0 gromacs/cmake-3.15.7-icc-19.1-openmpi ---- 0 gromacs/cmake-3.15.7-llvm-8-cuda-10.1-mpi ---- 0 gromacs/cmake-3.11.4-llvm-3 ---- 0 gromacs/cmake-3.13.0-llvm-9-intelopencl-openmpi-master ---- 0 gromacs/gmx-multimage ---- 0 gromacs/cmake-3.15.7-gcc-8-cuda-10.1 ---- 0 gromacs/cmake-3.17.2-oneapi-2021.1-beta08 ---- 0 gromacs/ci-ubuntu-18.04-gcc-7-cuda-10.2 ---- 0 Error: in download: curl: (28) Operation timed out after 6000 milliseconds with 0 out of 0 bytes received gromacs/cmake-3.9.6-gcc-6-cuda-10.1-opencl-clfft-mpi ---- 0 gromacs/cmake-3.15.7-llvm-8-intel-opencl ---- 0 gromacs/cmake-3.15.7-llvm-8-cuda-10.0-openmpi-master ---- 0 gromacs/cmake-3.15.7-llvm-9 ---- 0 gromacs/cmake-3.15.7-llvm-8-cuda-10.0-mpi ---- 0 gromacs/ci-ubuntu-18.04-llvm-8-cuda-10.1 ---- 0 gromacs/cmake-3.13.0-gcc-7-cuda-9.0-mpi ---- 0 gromacs/cmake-3.13.0-llvm-9-amdopencl-openmpi-master ---- 0 gromacs/cmake-3.13.0-llvm-9-intel-opencl ---- 0 gromacs/cmake-3.15.7-gcc-8-cuda-10.1-opencl-clfft-mpi ---- 0 gromacs/cmake-3.9.6-gcc-5-cuda-9-mpi ---- 0 gromacs/cmake-3.15.7-llvm-9-cuda-10.2-mpi ---- 0 gromacs/cmake-3.9.6-gcc-9-cuda-10.0-mpi ---- 0 [OK] T014: udocker search -a ------------------------------------------------------------> Info: downloading layer sha256:25fa05cd42bd8fabb25d2a6f3f8c9f7ab34637903d00fd2ed1c1d0fa980427dd Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 [OK] T015: udocker pull ubuntu:18.04 ------------------------------------------------------------> Error: in download: curl: (28) Operation timed out after 6000 milliseconds with 0 out of 0 bytes received Info: downloading layer sha256:25fa05cd42bd8fabb25d2a6f3f8c9f7ab34637903d00fd2ed1c1d0fa980427dd Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 [OK] T016: udocker --insecure pull ubuntu:18.04 ------------------------------------------------------------> Info: verifying: ubuntu:18.04 Info: loading structure Info: verifying layers Info: layer ok: sha256:25fa05cd42bd8fabb25d2a6f3f8c9f7ab34637903d00fd2ed1c1d0fa980427dd Info: layer ok: sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: image Ok [OK] T017: udocker verify ubuntu:18.04 ------------------------------------------------------------> REPOSITORY ubuntu:18.04 . [OK] T018: udocker images ------------------------------------------------------------> { "architecture": "amd64", "config": { "AttachStderr": false, "AttachStdin": false, "AttachStdout": false, "Cmd": [ "bash" ], "Domainname": "", "Entrypoint": null, "Env": [ "PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" ], "Hostname": "", "Image": "sha256:d207f9055fcf01ac5c8231b88b56098a667475e94547cedc334c8c7c2ef8f22b", "Labels": null, "OnBuild": null, "OpenStdin": false, "StdinOnce": false, "Tty": false, "User": "", "Volumes": null, "WorkingDir": "" }, "container": "49ae0ef29bbebdcfb000569e222fd2ffbc8d8762ca8a9a419159a042c26377d1", "container_config": { "AttachStderr": false, "AttachStdin": false, "AttachStdout": false, "Cmd": [ "/bin/sh", "-c", "#(nop) ", "CMD [\"bash\"]" ], "Domainname": "", "Entrypoint": null, "Env": [ "PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" ], "Hostname": "49ae0ef29bbe", "Image": "sha256:d207f9055fcf01ac5c8231b88b56098a667475e94547cedc334c8c7c2ef8f22b", "Labels": {}, "OnBuild": null, "OpenStdin": false, "StdinOnce": false, "Tty": false, "User": "", "Volumes": null, "WorkingDir": "" }, "created": "2021-06-17T23:31:22.471354017Z", "docker_version": "19.03.12", "id": "7ec2fc34c6353200971345f1378d3c65adbb22d65182d3df19e8dccf64ab16b4", "os": "linux", "parent": "11374178a4566afd7c1017ef6338ce343308f0c051bfd403e09d6d83c430eefd", "throwaway": true } [OK] T019: udocker inspect (image) ------------------------------------------------------------> ContainerID = 1ce33a4c-3d57-3af1-aab5-64f71536555d [OK] T020: udocker create ubuntu:18.04 ------------------------------------------------------------> [OK] T021: udocker create --name=ubuntu ubuntu:18.04 ------------------------------------------------------------> CONTAINER ID P M NAMES IMAGE 1ce33a4c-3d57-3af1-aab5-64f71536555d . W ubuntu:18.04 741dd2d4-cb26-35f3-8c48-d04e028e5158 . W ['ubuntu'] ubuntu:18.04 [OK] T022: udocker ps ------------------------------------------------------------> 1ce33a4c-3d57-3af1-aab5-64f71536555d . W ['conti'] ubuntu:18.04 [OK] T023: udocker name 1ce33a4c-3d57-3af1-aab5-64f71536555d ------------------------------------------------------------> Info: container name: conti removed. 1ce33a4c-3d57-3af1-aab5-64f71536555d . W ubuntu:18.04 [OK] T024: udocker rmname ------------------------------------------------------------> { "architecture": "amd64", "config": { "AttachStderr": false, "AttachStdin": false, "AttachStdout": false, "Cmd": [ "bash" ], "Domainname": "", "Entrypoint": null, "Env": [ "PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" ], "Hostname": "", "Image": "sha256:d207f9055fcf01ac5c8231b88b56098a667475e94547cedc334c8c7c2ef8f22b", "Labels": null, "OnBuild": null, "OpenStdin": false, "StdinOnce": false, "Tty": false, "User": "", "Volumes": null, "WorkingDir": "" }, "container": "49ae0ef29bbebdcfb000569e222fd2ffbc8d8762ca8a9a419159a042c26377d1", "container_config": { "AttachStderr": false, "AttachStdin": false, "AttachStdout": false, "Cmd": [ "/bin/sh", "-c", "#(nop) ", "CMD [\"bash\"]" ], "Domainname": "", "Entrypoint": null, "Env": [ "PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" ], "Hostname": "49ae0ef29bbe", "Image": "sha256:d207f9055fcf01ac5c8231b88b56098a667475e94547cedc334c8c7c2ef8f22b", "Labels": {}, "OnBuild": null, "OpenStdin": false, "StdinOnce": false, "Tty": false, "User": "", "Volumes": null, "WorkingDir": "" }, "created": "2021-06-17T23:31:22.471354017Z", "docker_version": "19.03.12", "id": "7ec2fc34c6353200971345f1378d3c65adbb22d65182d3df19e8dccf64ab16b4", "os": "linux", "parent": "11374178a4566afd7c1017ef6338ce343308f0c051bfd403e09d6d83c430eefd", "throwaway": true } [OK] T025: udocker inspect (container 1ce33a4c-3d57-3af1-aab5-64f71536555d) ------------------------------------------------------------> 3670a0ac-91bb-33c1-8003-7d216071f8af [OK] T026: udocker clone --name=myclone 1ce33a4c-3d57-3af1-aab5-64f71536555d ------------------------------------------------------------> Info: exporting to file myexportcont.tar [OK] T027: udocker export -o myexportcont.tar 1ce33a4c-3d57-3af1-aab5-64f71536555d ------------------------------------------------------------> Info: deleting container: 1ce33a4c-3d57-3af1-aab5-64f71536555d [OK] T028: udocker rm 1ce33a4c-3d57-3af1-aab5-64f71536555d ------------------------------------------------------------> execmode: P1 nvidiamode: False [OK] T029: udocker setup ubuntu ------------------------------------------------------------> [OK] T030: udocker mkrepo /home/lauscher/.udocker-test-h45y7k9X ------------------------------------------------------------> Info: udocker command line interface 1.3.0 Info: searching for udockertools 1.2.8 Info: installing udockertools 1.2.8 Info: installation of udockertools successful Error: in download: curl: (28) Resolving timed out after 6000 milliseconds Info: downloading layer sha256:25fa05cd42bd8fabb25d2a6f3f8c9f7ab34637903d00fd2ed1c1d0fa980427dd Info: downloading layer sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 [OK] T031: udocker --repo=/home/lauscher/.udocker-test-h45y7k9X pull ubuntu:18.04 ------------------------------------------------------------> Info: verifying: ubuntu:18.04 Info: loading structure Info: verifying layers Info: layer ok: sha256:25fa05cd42bd8fabb25d2a6f3f8c9f7ab34637903d00fd2ed1c1d0fa980427dd Info: layer ok: sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: image Ok [OK] T032: udocker --repo=/home/lauscher/.udocker-test-h45y7k9X verify ubuntu:18.04 ------------------------------------------------------------> Info: verifying: ubuntu:18.04 Info: loading structure Info: verifying layers Info: layer ok: sha256:25fa05cd42bd8fabb25d2a6f3f8c9f7ab34637903d00fd2ed1c1d0fa980427dd Info: layer ok: sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4 Info: image Ok [OK] T033: udocker --repo=/home/lauscher/.udocker-test-h45y7k9X verify ubuntu:18.04 ------------------------------------------------------------> Download a docker tar img file https://download.ncg.ingrid.pt/webdav/udocker_test/centos7.tar --2021-06-18 18:58:23-- https://download.ncg.ingrid.pt/webdav/udocker_test/centos7.tar Auflösen des Hostnamens download.ncg.ingrid.pt (download.ncg.ingrid.pt)… 194.210.120.220 Verbindungsaufbau zu download.ncg.ingrid.pt (download.ncg.ingrid.pt)|194.210.120.220|:443 … verbunden. HTTP-Anforderung gesendet, auf Antwort wird gewartet … 200 OK Länge: 209612288 (200M) [application/x-tar] Wird in »centos7.tar« gespeichert. centos7.tar 100%[===================>] 199,90M 87,6KB/s in 42m 18s 2021-06-18 19:40:43 (80,7 KB/s) - »centos7.tar« gespeichert [209612288/209612288] ------------------------------------------------------------> Info: adding layer: 90162fd7e6fcf45916ddd8c41753f5b98c6a31d0c9366719c34f98aafe705ea7 centos:7 [OK] T034: udocker load -i centos7.tar ------------------------------------------------------------> [OK] T035: udocker protect ubuntu (container) ------------------------------------------------------------> Error: container is protected [OK] T036: udocker rm ubuntu (try to remove protected container) ------------------------------------------------------------> [OK] T037: udocker unprotect ubuntu (container) ------------------------------------------------------------> Info: deleting container: 741dd2d4-cb26-35f3-8c48-d04e028e5158 [OK] T038: udocker rm ubuntu (try to remove unprotected container) ------------------------------------------------------------> Download a docker tar container file https://download.ncg.ingrid.pt/webdav/udocker_test/centos7-cont.tar --2021-06-18 19:40:44-- https://download.ncg.ingrid.pt/webdav/udocker_test/centos7-cont.tar Auflösen des Hostnamens download.ncg.ingrid.pt (download.ncg.ingrid.pt)… 194.210.120.220 Verbindungsaufbau zu download.ncg.ingrid.pt (download.ncg.ingrid.pt)|194.210.120.220|:443 … verbunden. HTTP-Anforderung gesendet, auf Antwort wird gewartet … 200 OK Länge: 209604096 (200M) [application/x-tar] Wird in »centos7-cont.tar« gespeichert. centos7-cont.tar 100%[===================>] 199,89M 129KB/s in 38m 54s 2021-06-18 20:19:39 (87,7 KB/s) - »centos7-cont.tar« gespeichert [209604096/209604096] ------------------------------------------------------------> Info: added layer 8fbc80884152233e7f4e3ec8067eff271d45cad0bf6343a8612f05d8d710bedd [OK] T039: udocker import centos7-cont.tar mycentos1:latest ------------------------------------------------------------> 353ddc33-c13b-3d51-8cc4-091892915bbd [OK] T040: udocker import --tocontainer --name=mycont centos7-cont.tar ------------------------------------------------------------> Warning: check container content: f520345f-bbb1-3784-b2bf-0f62a9e748ff f520345f-bbb1-3784-b2bf-0f62a9e748ff [OK] T041: udocker import --clone --name=clone_cont centos7-cont.tar ------------------------------------------------------------> Info: deleting image: ubuntu:18.04 [OK] T042: udocker rmi ubuntu:18.04 ------------------------------------------------------------> CONTAINER ID P M MOD NAMES IMAGE 353ddc33-c13b-3d51-8cc4-091892915bbd . W P1 ['mycont'] IMPORTED:unknown f520345f-bbb1-3784-b2bf-0f62a9e748ff . W P1 ['clone_cont'] CLONING:inprogress 3670a0ac-91bb-33c1-8003-7d216071f8af . W P1 ['myclone'] ubuntu:18.04 [OK] T043: udocker ps -m ------------------------------------------------------------> CONTAINER ID P M MOD SIZE NAMES IMAGE 353ddc33-c13b-3d51-8cc4-091892915bbd . W P1 213 ['mycont'] IMPORTED:unknown f520345f-bbb1-3784-b2bf-0f62a9e748ff . W P1 1 ['clone_cont'] CLONING:inprogress 3670a0ac-91bb-33c1-8003-7d216071f8af . W P1 69 ['myclone'] ubuntu:18.04 [OK] T044: udocker ps -s -m ------------------------------------------------------------> REPOSITORY centos:7 . /home/lauscher/.udocker/repos/centos/7 /90162fd7e6fcf45916ddd8c41753f5b98c6a31d0c9366719c34f98aafe705ea7.json (1 MB) /container.json (1 MB) /90162fd7e6fcf45916ddd8c41753f5b98c6a31d0c9366719c34f98aafe705ea7.layer (199 MB) mycentos1:latest . /home/lauscher/.udocker/repos/mycentos1/latest /8fbc80884152233e7f4e3ec8067eff271d45cad0bf6343a8612f05d8d710bedd.json (1 MB) /8fbc80884152233e7f4e3ec8067eff271d45cad0bf6343a8612f05d8d710bedd.layer (199 MB) [OK] T045: udocker images -l ------------------------------------------------------------> Clean up files containers and images used in the tests Info: deleting container: 353ddc33-c13b-3d51-8cc4-091892915bbd Info: deleting container: f520345f-bbb1-3784-b2bf-0f62a9e748ff Info: deleting container: 3670a0ac-91bb-33c1-8003-7d216071f8af Info: deleting image: mycentos1 Info: deleting image: centos:7 ------------------------------------------------------------> [OK] All tests passed ```

[jorge-lip]

Yes it is alerting of some TCP connect timeouts which means that your network must have some problems. There is recovery for these errors, the operations are retried and it completes ok.

[mviereck]

There is recovery for these errors, the operations are retried and it completes ok.

Great! docker and podman just drop hours of download on such failures.

So far I am good with the tests and we can close here.

If it helps you, I would run nosetests -v --with-coverage --cover-package=udocker tests/unit again to show you the error messages it produced here. I cannot assess if they are harmless or important.

Remaining possible improvements, but I won't insist:

• More obvious differenciation between code tests and user level tests.
• Ability to run user level tests even with existing ~/.udocker.

[jorge-lip]

Thanks, Yes please, send us those error messages. Ok we will make the tests differentiation more clear in the documentation Regarding the ~/.udocker the best approach is for the user himself to rename .udocker to something else, run the tests and then move back the directory. We can add that to the documentation as well.

[mviereck]

Thanks, Yes please, send us those error messages.

nose.log

[mariojmdavid]

those are error messages from the code itself when the unit test passes though the branch containing that message and not a real error from the test. nonetheless I have set the message level to 0 so as not to show any messages from the code in the execution of the unit tests, that commit will be done soon

[mariojmdavid]

solved in latest commit to master, only affected the unit tests

[mviereck]

Regarding the ~/.udocker the best approach is for the user himself to rename .udocker to something else, run the tests and then move back the directory. We can add that to the documentation as well.

This would be a good addition. I tried to set UDOCKER_DIR to a different folder, but that did not help.

those are error messages from the code itself when the unit test passes though the branch containing that message and not a real error from the test.

ok, I understand.

nonetheless I have set the message level to 0 so as not to show any messages from the code in the execution of the unit tests, that commit will be done soon

Set in the way you think it's best. I did not want to enforce a change here, just tried to understand.

Thank you for all this, I am good with the tests.

[mariojmdavid]

as per the last comment we will close this issue